Gene name | Gene position (bp)1 | Nearest and most significant SNPs of GWAS | Traits | Raw pvalue | Reference | ||
---|---|---|---|---|---|---|---|
 | Distance | Name | Position (bp)2 |  |  |  | |
SAA3 | Chr29: 26668046–26671801 | 49.5 Kb | ARS-BFGL-NGS-24998 | 26721324 | PP | 2.96E-08 | Cole et al., BMC Genomics, 2011 [8] |
 |  | 4.2 Mb | UA-IFASA-8605 | 30901735 | FP, PP | 4.90E-13, 1.50E-16 |  |
HEATR7B2 | Chr20: 33455667–33528569 | 23.2 Kb | ARS-BFGL-BAC-2469 | 33433160 | PP | 1.21E-08 | Jiang et al., Plos One, 2010 [6] |
 |  | 2.6 Mb | rs41640170 | 36097136 | PP | 1E-6.88 | Schopen et al., J Dairy Sci, 2011 [9] |
TRIB3 | Chr13: 61176217–61187210 | 2.1 Mb | BFGL-NGS-119420 | 59101909 | FP, PP | 1.14E-21, 3.49E-18 | Cole et al., BMC Genomics, 2011 [8] |
 |  | 9.3 Mb | rs29021058 | 70524323 | PP | 0.0018 | Kolbehdari et al., J Anim Breed Genet, 2009 [5] |
SESN2 | Chr2: 125698159–125714128 | 2.0 Mb | ARS-BFGL-NGS-69013 | 123717269 | FP, PP | 1.46E-11, 3.26E-09 | Cole et al., BMC Genomics, 2011 [8] |
 |  | 2.7 Mb | BTA-31250-no-rs | 128437731 | FP, PP | 3.75E-10, 1.26E-24 |  |
CHAC1 | Chr10: 36598393–36600764 | 0.16 Mb | Hapmap53714-rs29017586 | 36758715 | FP, PP | 9.84E-07, 6.64E-12 | Cole et al., BMC Genomics, 2011 [8] |
NR4A1 | Chr5: 27977006–27992869 | 0.99 Mb | ARS-BFGL-NGS-5790 | 26986116 | FP, PP | 3.26E-14, 9.43E-28 | Cole et al., BMC Genomics, 2011 [8] |
SAA1 | Chr29: 26693328–26696498 | 24.8 Kb | ARS-BFGL-NGS-24998 | 26721324 | PP | 2.96E-08 | Cole et al., BMC Genomics, 2011 [8] |
 |  | 4.2 Mb | UA-IFASA-8605 | 30901735 | FP, PP | 4.90E-13, 1.50E-16 |  |
ATF3 | Chr16: 72820025–72832974 | 1.9 Mb | ARS-BFGL-NGS-70836 | 74741746 | PP | 3.58E-07 | Cole et al., BMC Genomics, 2011 [8] |
 |  | 3.3 Mb | ARS-BFGL-NGS-85980 | 76091078 | FP, PP | 6.46E-07, 8.33E-09 |  |
RPL23A | Chr11: 21526905–21574655 | 0.5 Mb | ARS-BFGL-NGS-100459 | 22128569 | PP | 1.03E-24 | Cole et al., BMC Genomics, 2011 [8] |
 |  | 4.0 Mb | BTB-01766447 | 17484533 | FP, PP | 4.51E-18, 8.90E-11 |  |
CDH16 | Chr18: 34733117–34743031 | 0.75 Mb | ARS-BFGL-NGS-107749 | 33986486 | FP, PP | 2.54E-13, 3.55E-18 | Cole et al., BMC Genomics, 2011 [8] |
VEGFA | Chr23: 17255946–17269998 | 2.9 Mb | ARS-BFGL-NGS-29490 | 20166517 | FP, PP | 4.05E-20, 2.32E-26 | Cole et al., BMC Genomics, 2011 [8] |
 |  | 1.8 Mb | rs29016156 | 15422973 | PP | 0.00099 | Kolbehdari et al., J Anim Breed Genet, 2009 [5] |
 |  | 0.19 Mb | rs41640789 | 17061460 | FP | 0.00012 | Kolbehdari et al., J Anim Breed Genet, 2009 [5] |
BoLA-DQB | Chr23: 25375269–25388620 | 4.9 Mb | ARS-BFGL-NGS-72191 | 30279220 | FP, PP | 8.46E-17, 1.09E-28 | Cole et al., BMC Genomics, 2011 [8] |
ARID1B | Chr9: 94882343–95271883 | 0.37 Mb | ARS-BFGL-NGS-81082 | 94511747 | FP, PP | 3.00E-11, 2.37E-08 | Cole et al., BMC Genomics, 2011 [8] |
PTHLH | Chr5: 82246521–82258858 | 1.5 Mb | Hapmap51303-BTA-74377 | 83790390 | FP | 1.20E-06 | Jiang et al., Plos One, 2010 [6] |
 |  | 0.63 Mb | ARS-BFGL-NGS-29557 | 81612132 | FP, PP | 2.97E-13, 5.97E-25 | Cole et al., BMC Genomics, 2011 [8] |
 |  | 6.2 Mb | rs41590827 | 76049666 | PP | 0.00013 | Kolbehdari et al., J Anim Breed Genet, 2009 [5] |
 |  | 9.9 Mb | rs41569048 | 92162494 | PP | 1E-4.72 | Schopen et al., J Dairy Sci, 2011 [9] |
H4 | Chr23: 31665561–31667068 | 1.4 Mb | ARS-BFGL-NGS-72191 | 30279220 | FP, PP | 8.46E-17, 1.09E-28 | Cole et al., BMC Genomics, 2011 [8] |
FAM71A | Chr16: 72811910–72814133 | 2.5 Mb | ARS-BFGL-NGS-85980 | 76091078 | FP, PP | 6.46E-07, 8.33E-09 | Cole et al., BMC Genomics, 2011 [8] |
THBS4 | Chr10: 10945424–10999244 | 0.90 Mb | BTB-00411816 | 11899342 | FP, PP | 2.71E-14, 3.45E-25 | Cole et al., BMC Genomics, 2011 [8] |
DDIT3 | Chr5: 56285007–56307931 | 0.46 Mb | ARS-BFGL-NGS-14781 | 56766165 | FP | 5.54E-10 | Cole et al., BMC Genomics, 2011 [8] |
M-SAA3.2 | Chr29: 26755567–26759547 | 34.2 Kb | ARS-BFGL-NGS-24998 | 26721324 | PP | 2.96E-08 | Cole et al., BMC Genomics, 2011 [8] |
 |  | 4.1 Mb | UA-IFASA-8605 | 30901735 | FP, PP | 7.90E-13, 1.50E-16 |  |
HIST1H2AC | Chr23: 31579046–31589230 | 0.95 Mb | BTA-68781-no-rs | 30711619 | FP, PP | 1.17E-17, 6.08E-27 | Cole et al., BMC Genomics, 2011 [8] |
P4HA2 | Chr7: 23480314–23513315 | 1.1 Mb | Hapmap49309-BTA-78604 | 24655689 | PP | 4.34E-14 | Cole et al., BMC Genomics, 2011 [8] |