From: Peroxidase gene discovery from the horseradish transcriptome
Contig number | Name (* novel) | Length nt | GC content% | Accession # | CAI calculated | Intron # | Signal sequence length | Disulfide bridges (EDBCP prediction) | pI mature protein |
---|---|---|---|---|---|---|---|---|---|
- | C1A | 1062 | 43.69 | HE963800 | 0.812 | 3 | 30 | [11–91] [44-49] [97–301] [177–209] | 5.59 |
15901 | C1B | 1056 | 43.94 | HE963801 | 0.808 | 3 | 28 | [11–91] [44-49] [97–301] [177–209] | 5.84 |
25148 | C1C* | 1059 | 45.14 | HE963802 | 0.809 | 3 | 29 | [11–91] [44-49] [97–301] [177–209] | 6.49 |
25148_2 | C1D* | 1059 | 45.04 | HE963803 | 0.810 | 3 | 29 | [11–91] [44-49] [97–301] [177–209] | 7.04 |
04627 | C2 | 1044 | 42.91 | HE963804 | 0.800 | 3 | 24 | [11–91] [44-49] [97–301] [177–209] | 8.56 |
- | C3 | 1050 | 46.76 | HE963805 | 0.781 | 3 | 29 | [11–91] [44-49] [97–300] [177–209] | 7.71 |
Manual assembly | A2A* | 1011 | 46.79 | HE963806 | 0.761 | 3 | 31 | [11–91] [44-49] [97–299] [176–208] | 4.93 |
Manual assembly | A2B* | 1011 | 46.69 | HE963807 | 0.761 | 3 | 31 | [11–91] [44-49] [97–299] [176–208] | 4.93 |
04382 | E5 | 1044 | 46.07 | HE963808 | 0.771 | 3 | 27 | [11–91] [44-49] [97–300] [177–209] | 8.84 |
01805 | 1805* | 1065 | 44.41 | HE963809 | 0.797 | 3 | 31 | [11–91] [44-49] [97–301] [177–209] | 5.97 |
22684 | 22684.1* | 1050 | 46.76 | HE963810 | 0.770 | 3 | 29 | [11–91] [44-49] [97–300] [177–209] | 6.98 |
22684_2 | 22684.2* | 1050 | 46.67 | HE963811 | 0.772 | 3 | 29 | [11–91] [44-49] [97–300] [177–209] | 6.37 |
01350 | 1350* | 975 | 50.97 | HE963812 | 0.707 | 3 | 28 | [11–91] [44-49] [97–292] [176–201] | 8.67 |
02021 | 2021* | 996 | 46.08 | HE963813 | 0.788 | 3 | 29 | [11–89] [44-49] [95–297] | 9.46 |
23190 | 23190.1* | 1080 | 49.26 | HE963817 | 0.724 | 2 | 31 42 | [11–92] [44-49] [98–293] [178–205] or [22–103] [55-60] [109–304] [189–216] | 8.40 6.58 |
23190_2 | 23190.2* | 1080 | 49.17 | HE963817 | 0.722 | 2 | 31 42 | [11–92] [44-49] [98–293] [178–205] or [22–103] [55-60] [109–304] [189–216] | 8.60 7.09 |
04663 | 4663* | 1077 | 47.82 | HE963814 | 0.748 | 3 | 31 | [11–91] [44-49] [97–299] [176–208] | 4.48 |
06351 | 6351* | 945 | 43.39 | HE963816 | 0.786 | 3 | 18 | [17–96] [50-55] [102–292] [180–206] | 6.37 |
03523 | 3523* | 960 | 44.58 | HE963820 | 0.761 | 0 | 22 | [11–92] [44-49] [98–293] [177–203] | 8.99 |
05508 | 5508.1* | 966 | 49.28 | HE963815 | 0.735 | 2 | 24 30 | [11-87] [44-49] [93–287] [171–198] or [17–93] [50-55] [99–293] [177–204] | 8.49 8.47 |
05508_2 | 5508.2* | 966 | 49.38 | HE963815 | 0.735 | 2 | 24 30 | [11-87] [44-49] [93–287] [171–198] or [17–93] [50-55] [99–293] [177–204] | 8.49 8.47 |
22489_1 | 22489.1* | 978 | 51.02 | HE963818 | 0.726 | 2 | 23 34 | [22–98] [55-60] [104–298] [182–209] or [11-87] [44-49] [93–287] [171–198] | 8.93 8.51 |
22489_2 | 22489.2* | 978 | 50.82 | HE963819 | 0.727 | 2 | 23 34 | [22–98] [55-60] [104–298] [182–209] or [11-87] [44-49] [93–287] [171–198] | 8.93 8.51 |
06117 | 6117* | 1008 | 47.02 | HE963821 | 0.802 | 3 | 22 32 | [11–91] [44-49] [97–298] [176–208] or [21–101] [54-59] [107–308] [186–218] | 5.52 6.16 |
17517_1 | 17517.1* | 972 | 48.46 | HE963822 | 0.737 | 2 | 23 24 | [12–88] [45-50] [94–296] [171–203] or [11-87] [44-49] [93–295] [170–202] | 9.49 9.39 |
17517_2 | 17517.2* | 972 | 48.56 | HE963823 | 0.739 | 2 | 23 24 | [12–88] [45-50] [94–296] [171–203] or [11-87] [44-49] [93–295] [170–202] | 9.52 9.41 |
08562_1 | 08562.1* | 996 | 47.09 | HE963824 | 0.779 | 3 | 22 28 | [11–91] [44-49] [97–298] [176–208] or [17–97] [50-55] [103–304] [182–214] | 9.01 9.03 |
08562_4 | 08562.2* | 996 | 47.79 | HE963825 | 0.788 | 3 | 22 28 | [11–91] [44-49] [97–298] [176–208] or [17–97] [50-55] [103–304] [182–214] | 9.00 9.02 |