Table 3 Predicted mRNA binding targets of sRNA-1 and sRNA-2 on pXO1
Small RNA | Closest ORF (Locus Tag) | Protein name or ID | Region of predicted mRNA | Region of redicted sRNA | Energy of interaction (kJ/mol) | Z-score |
|---|---|---|---|---|---|---|
sRNA-1 | pXO1_0199 | relA-like | 184-196 | 125-137 | −13.98 | −2.13 |
pXO1_0146 | AtxA | (-138)-(-129) | 75-84 | −13.53 | −2.01 | |
pXO1_0113 | YP_016444.2 | 239-259 | 62-82 | −12.79 | −1.82 | |
pXO1_0080 | S-layer domain protein | 637-653 | 116-137 | −12.47 | −1.73 | |
pXO1_0182 | Integrase/recombinase | 20-29 | 75-84 | −12.05 | −1.62 | |
sRNA-2 | pXO1_0066 | YP_016397.2 | 1079-1103 | 61-86 | −14.47 | −3.21 |
pXO1_0067 | RepX (FtsZ-like) | 268-278 | 68-78 | −13.36 | −2.72 | |
pXO1_0010 | YP_016341.2 | 178-199 | 61-78 | −13.32 | −2.7 | |
pXO1_0130 | UDP-glucose 6-dehydrogenase | 1006-1023 | 69-86 | −12.53 | −2.35 | |
pXO1_0113 | YP_016444.2 | 107-132 | 77-104 | −12.52 | −2.35 |