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Table 3 Predicted mRNA binding targets of sRNA-1 and sRNA-2 on pXO1

From: Transcriptome analysis identifies Bacillus anthracis genes that respond to CO2through an AtxA-dependent mechanism

Small RNA Closest ORF (Locus Tag) Protein name or ID Region of predicted mRNA Region of redicted sRNA Energy of interaction (kJ/mol) Z-score
sRNA-1 pXO1_0199 relA-like 184-196 125-137 −13.98 −2.13
pXO1_0146 AtxA (-138)-(-129) 75-84 −13.53 −2.01
pXO1_0113 YP_016444.2 239-259 62-82 −12.79 −1.82
pXO1_0080 S-layer domain protein 637-653 116-137 −12.47 −1.73
pXO1_0182 Integrase/recombinase 20-29 75-84 −12.05 −1.62
sRNA-2 pXO1_0066 YP_016397.2 1079-1103 61-86 −14.47 −3.21
pXO1_0067 RepX (FtsZ-like) 268-278 68-78 −13.36 −2.72
pXO1_0010 YP_016341.2 178-199 61-78 −13.32 −2.7
pXO1_0130 UDP-glucose 6-dehydrogenase 1006-1023 69-86 −12.53 −2.35
pXO1_0113 YP_016444.2 107-132 77-104 −12.52 −2.35
  1. RNAPredator predictions of the five mRNA targets having the lowest Z-scores for each sRNA are listed. Z-scores quantify the deviation of the binding energy for that interaction from the set of all possible sRNA-mRNA binding interactions.