De novo transcriptome analysis of Hevea brasiliensistissues by RNA-seq and screening for molecular markers

BMC Genomics

Table 5 Characterization of the 2,191 identified SNVs associated with 889 contigs

Nucleotide variation		Number of SNVs	Nonsense	Number of associated contigs	SNV position
Nucleotide variation		Number of SNVs	Nonsense	Number of associated contigs	Coding sequence	UTR	Non coding sequence
Exclusive to the RRIM600 library	Non-synonymous	339	20	161	326	13	0
	Synonymous	141		99	98	27	16
	Total	480		260	424	40	16
Exclusive to the RRIM600 OPS library	Non-synonymous	470	20	225	464	6	0
	Synonymous	165		115	90	45	30
	Non-determined*	31		22	-	-	-
	Total	666		362	554	51	30
Common for both libraries	Non-synonymous	900	39	211	804	96	0
	Synonymous	145		56	95	31	19
	Total	1.045		267	899	127	19

ISSN: 1471-2164