Table 1 Genomic features of prophages in Mycobacterium genomes

phiMAV_1

M.avium 104

746,437-794,445

-

48.0 kb

GGACCTGCGGATTAAAAGTC

This study

phiMAV_2

1,446,840-1,463,298

-

16.5 kb

GTGGTCAGCTT

This study

phiMmcs_1

M.sp.MCS

3,067,419-3,080,311

tRNA-Pro

12.9 kb

CCGTTGCCGT

This study

phiMmcs_2

4,054,082-4,063,334

-

9.3 kb

GGTGAGGGCGT

This study

phiMkms_1

M.sp.KMS

3,085,307-3,098,199

-

12.9 kb

CCGTTGCCGT

This study

phiMkms_2

4,088,564-4,097,816

-

9.3 kb

GGTGAGGGCGT

This study

phiBN42_1

M.canettii CIPT 140070010

1,514,379-1,522,784

tRNA-Arg

8.4 kb

GTGCCCCCGGCAGGATTCG

This study

phiBN44_1

M.canettii CIPT 140060008

3,433,693-3,444,793

-

11.1 kb

CCGGAGAAGAAGTCATGGTTCT

This study

phiMCAN_1

M.canettii CIPT 140010059

1,180,578-1,191,783

-

11.2 kb

GTTCGAGTCCGACTGGGGGCAC

This study

phiMycsm_1

M.smegmatis JS623

4,221,770-4,232,715

-

10.9 kb

GCCGACGACG

This study

phiW7S_1

M.sp. MOTT36Y

968,527-980,490

tRNA-Ala

12.0 kb

GTTCGCATCGAGTAGGTCAGGGGTTCGATTCCC

This study

phiRv1^a

M.tuberculosis H37Rv

1,779,267-1,788,525

-

9.3 kb

GGTTGGCCGTGG

[8]

phiRv2^a

2,970,063-2,980,853

tRNA-Val

10.8 kb

CCGCGCAATAAACGCGCAATA

[8]

phiMU01^a

M.ulcerans Agy99

NM

NM

18 kb

NM

[9]

phiMU02^a

NM

NM

24 kb

NM

[9]

phiMmar01^a

M.marinum M

27,047- 33,095

tRNA-Leu

6.0 kb

NM

[10]

phiMmar02^a

4,812,334- 4,869,620

tRNA- Lys

57.8 kb

NM

[10]

phiMmar03^a

5,460,072– 5,470,770

tRNA- Leu

10.7 kb

NM

[10]

phiMmar04^a

5,628,721– 5,636,467

tRNA- Arg

7.7 kb

NM

[10]

phiMmar05^a

5,884,651– 5,904,290

tRNA-Phe

19.6 kb

NM

[10]

phiMmar06^a

2,567,503– 2,589,174

-

21.6 kb

NM

[10]

phiMmar07^a

3,082,858– 3,100,046

tRNA- Pro

17.2 kb

NM

[10]

phiMmar08^a

3,808,513-3,851,917

tRNA-Leu

43.0 kb

NM

[10]

phiMmar09^a

688,611-695,966

tRNA-Gly

7.4 kb

NM

[10]

phiMmar10^a

4,405,758- 4,430,810

tRNA-Met

25.1 kb

NM

[10]

Prophage Araucaria^a

M.abscessus subsp. bolletii BD Contig17

NM (1,000-65,113)

-

64.1 kb

NM

[6]

phiMAB_1^#

M.abscessus ATCC 19977

1,754,551-1,835,095

tRNA-Met

80.5 kb

NM

[11]

phiMAB_2^#

233,621-247,981

tRNA-Arg

14.4 kb

NM

[11]

phiMAB_3^#

770,916-778,753

tRNA-Lys

7.8 kb

NM

[11]

phiMAB_4^#

4,909,957-4,959,626

-

49.7 kb

NM

[11]

phiMAB47J26_1^#

M.abscessus Strain 47 J26 Contig02

NM (55,744-116,295)

NM (tRNA-Leu)

60.5 kb

NM (GCGGACTTAAAATCCGCCAAGTGTCGGTTCGAGTCCGACTGGGGGCAC)

[12]

phiMAB47j26_2^#

M.abscessus Strain 47 J26 Contig03

NM (58,656-105,841)

-

47.2 kb

NM

[12]

phiOUW_1^#

M.abscessus M93 Contig09

NM (267,663-342,276)

NM (tRNA-Arg)

74.6 kb

NM (GTGCGCCCGAAGGGATTCGAACCCCTAACCTTCTG)

[13]

phiM172_1^#

M.massiliense Strain M172 Contig06

NM (358,576-422,610)

NM (tRNA-Val)

64.0 kb

NM (TTGGTGGGCGCGGAGGGTTTCGAACCC)

[14]

phiM172_2^#

NM (456,450-513,710)

-

57.3 kb

NM (CAACCAGTCGGCCTGA)

[14]

phiSTB-I_1^#

M.canettii STB-1 (CIPT 140070007)

NM

tRNA-Lys

55 kb

NM

[15]

phiDSM_1^#

M.simiae DSM 44165

NM

NM

40 kb

NM

[16]

phiDSM_2^#

NM

NM

7 kb

NM

[16]

phiDSM_3^#

NM

NM

18 kb

NM

[16]