Table 1 Examples of gene ontology terms commonly associated with virulence identified in QPX transcriptome; F: molecular function, P: biological process
Gene Ontology term | GO category | GO level | GO ID | Seqs no. |
|---|---|---|---|---|
Degradation of biopolymers hydrolase activity | Â | Â | ||
Hydrolase activity | F | 3 | GO:0016787 | 777 |
  Nuclease activity | F | 5 | GO:0004518 | 29 |
  Phosphatase activity | F | 6 | GO:0016791 | 27 |
  Lipase activity | F | 5 | GO:0016298 | 9 |
  Phospholipase activity | F | 6 | GO:0004620 | 4 |
  Chitinase activity | F | 6 | GO:0004568 | 3 |
  Glucosidase activity | F | 6 | GO:0015926 | 2 |
  Amylase activity | F | 6 | GO:0016160 | 1 |
  Galactosidase activity | F | 6 | GO:0015925 | 1 |
Peptidase activity | F | 4 | GO:0008233 | 203 |
  Metallopeptidase activity | F | 6 | GO:0008237 | 47 |
  Serine-type peptidase activity | F | 5 | GO:0008236 | 45 |
  Cysteine-type peptidase activity | F | 6 | GO:0008234 | 35 |
  Metalloendopeptidase activity | F | 7 | GO:0004222 | 30 |
  Aspartic-type endopeptidase activity | F | 7 | GO:0004190 | 10 |
  Threonine-type peptidase activity | F | 6 | GO:0070003 | 7 |
  Peptidase inhibitor activity | F | 4 | GO:0030414 | 9 |
Cell homeostasis and protection against oxidative stress | Â | Â | ||
Antioxidant activity | F | 2 | GO:0016209 | 17 |
  Peroxidase activity | F | 3 | GO:0004601 | 10 |
  Superoxide metabolic process | P | 5 | GO:0006801 | 5 |
  Catalase activity | F | 4 | GO:0004096 | 4 |
  Thioredoxin-disulfide reductase activity | F | 3 | GO:0004791 | 2 |
  Peroxiredoxin activity | F | 5 | GO:0051920 | 2 |
  Thioredoxin peroxidase activity | F | 4 | GO:0008379 | 1 |
  Glutathione peroxidase activity | F | 4 | GO:0004602 | 1 |
Secretion and polysaccharide production | Â | Â | ||
  Polysaccharide metabolic process | P | 4 | GO:0005976 | 21 |
  Polysaccharide biosynthetic process | P | 6 | GO:0000271 | 13 |
  Lipopolysaccharide biosynthetic process | P | 6 | GO:0009103 | 3 |
  Extracellular polysaccharide metabolic process | P | 6 | GO:0046379 | 2 |
  Secretion | P | 5 | GO:0046903 | 8 |
  Exocytosis | P | 6 | GO:0006887 | 4 |
  Vesicle docking involved in exocytosis | P | 5 | GO:0006904 | 3 |
  Vesicle-mediated transport | P | 5 | GO:0016192 | 38 |
Adhesion and recognition | Â | Â | ||
  Cell adhesion | P | 3 | GO:0007155 | 4 |
  Receptor activity | F | 4 | GO:0004872 | 34 |
  G-protein coupled receptor protein signaling pathway | P | 5 | GO:0007186 | 18 |
  Cell communication | P | 3 | GO:0007154 | 13 |