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Table 3 Selected differentially expressed genes in QPX exposed to four temperature treatments

From: Characterization of the transcriptome and temperature-induced differential gene expression in QPX, the thraustochytrid parasite of hard clams

Sequence description Mean fold changed Seq. ID number Top BLAST Hit
  27°C 23°C 13°C 10°C   Accession no. E-value
Protein stability        
dnaj protein 1 -1.5 -1.6 1.4 1.2 qpx_c101 XP_002287676 4.13E-06
dnaj protein 2 -1.3 -2.3 1.4 1.5 qpx_c9231 XP_002505603 7.23E-23
dnaj protein 3 -2.1 -1.9 1.5 1.6 qpx_c11973 EGZ29544 1.71E-06
Heat shock protein 40 kDa -2.2 -1.7 1.4 1.6 qpx_c37 XP_003496481 1.35E-41
Heat shock protein 70 kDa 1 -2.7 -4.1 1.6 1.9 qpx_c366 XP_002788182 1.24E-33
Heat shock protein 70 kDa 2 -2.2 -3.1 1.6 1.6 qpx_c2869 EGZ24428 4.92E-79
Heat shock protein 70 kDa 3 -1.7 -1.8 1.4 1.4 qpx_c1020 XP_001694468 9.67E-58
Heat shock protein 90 kDa -0.9 -4.0 1.5 1.6 qpx_c16851 XP_002291118 6.50E-49
Heat shock protein 100 kDa 0.2 -3.8 1.7 0.1 qpx_c3466 XP_635137 5.11E-27
Heat shock protein 18 kDa 2.2 0.5 -5.5 -6.0 qpx_c56 NP_662846 1.95E-16
Heat shock protein 16 kDa 0.3 1.8 -1.9 -2.2 qpx_c2700 ADR66511 4.49E-15
Heat shock protein 15 kDa 0.4 1.5 -1.6 -1.6 qpx_c5637 YP_969657 1.64E-13
Proteolysis        
Cysteine peptidase C1-1 1.9 0.5 -1.9 -5.3 qpx_c534 XP_002507788 1.07E-56
Cysteine peptidase C1-2 0.2 1.8 -1.6 -2.2 qpx_c5487 XP_002178071 6.01E-34
Cysteine peptidase C1-3 -2.1 -1.3 0.4 2.0 qpx_c4154 CAB43538 1.44E-09
Cysteine peptidase C1-4 -3.9 4.6 -5.5 -2.7 qpx_c1221 EGD76061 1.37E-06
Cysteine peptidase C1-5 -2.2 -2.3 1.5 1.6 qpx_c8710 XP_003212177 2.04E-13
Metallopeptidase M12B -5.9 -5.9 1.8 2.3 qpx_c6353 ADW54356 3.64E-06
Metallopeptidase M32 -1.7 -1.4 1.6 1.1 qpx_c5681 ZP_09027479 5.64E-21
Serine peptidase S8-1 0.7 2.0 -3.9 -5.7 qpx_c765 ABI79453 1.82E-34
Serine peptidase S8-2 -1.3 2.2 -2.7 -2.5 qpx_c1822 ABI79453 3.26E-34
Serine peptidase S8-3 -1.8 2.6 -3.5 -3.8 qpx_c2550 ABI79453 2.46E-53
Serine carboxypeptidase S10-1 0.3 1.7 -2.0 -1.7 qpx_c2447 EGB09909 1.21E-47
Serine carboxypeptidase S10-2 0.7 2.0 -2.8 -2.7 qpx_c8079 XP_001747631 8.39E-08
Serine carboxypeptidase S28-1 0.3 1.5 -1.4 -1.4 qpx_c13341 CCA21035 1.27E-13
Serine carboxypeptidase S28-2 -0.2 1.8 -2.2 -2.8 qpx_c2535 EGD81876 6.83E-53
Oxidative stress        
Catalase -1.6 -2.1 1.2 1.9 qpx_c2181 AEX91749 1.50E-33
Cu/Zn superoxide dismutase 1 -0.6 1.9 -1.7 -2.0 qpx_c1801 AAN85727 6.97E-28
Cu/Zn superoxide dismutase 2 -0.3 1.7 -1.7 -1.8 qpx_c3152 ADN04915 9.10E-40
Mg/Fe superoxide dismutase -0.4 1.9 -2.2 -1.9 qpx_c6686 XP_002958078 2.13E-27
Superoxide NADPH oxidase -1.8 -1.8 1.5 1.5 qpx_c1054 EGB04413 5.01E-24
Thioredoxin 1 -0.4 1.9 -1.9 -2.2 qpx_c1718 XP_765168 4.11E-25
Thioredoxin 2 -1.2 1.6 -1.4 -1.3 qpx_c2033 XP_002402396 3.08E-27
Thioredoxin 3 -0.2 1.9 -2.2 -2.5 qpx_c4189 XP_001800478 8.60E-19
Thioredoxin reductase 1 0.4 -1.2 -1.2 1.5 qpx_c1123 EEE25525 2.45E-38
Thioredoxin reductase 2 -1.8 -2.0 1.5 1.4 qpx_c2283 EGB06390 7.90E-46
Thioredoxin reductase 3 1.1 1.3 -1.2 -1.6 qpx_c3882 XP_002181543 4.13E-33
Polysaccharide synthesis and secretion        
Glycosyltransferase -0.8 -2.4 1.4 1.4 qpx_c2871 XP_002296954 3.04E-05
Bligosaccharyl transferase -1.4 -2.2 1.4 1.5 qpx_c5264 XP_002185367 2.06E-22
Beta-amylase/glucosidase -4.2 -1.2 1.3 1.8 qpx_c1194 ZP_08507128 2.84E-13
Alpha-amylase/glucosidase -4.9 -4.8 1.7 2.2 qpx_c114 YP_750476 1.26E-32
Sugar transporter 1 -1.5 -1.4 1.3 1.5 qpx_c6741 XP_003452761 1.54E-13
Sugar transporter 2 -3.4 -2.1 1.5 2.0 qpx_c730 XP_642887 2.37E-12
gdp-mannose-3-epimerase -1.5 -1.1 1.2 1.3 qpx_c4458 XP_002956437 8.07E-94
udp-galactose-4-epimerase 0.1 -3.1 1.4 1.5 qpx_c5964 ZP_08151628 5.96E-34
udp-glucose gdp-mannose dehydrogenase -7.9 -5.1 2.5 1.2 qpx_c15700 ZP_06587676 1.90E-28
udp-glucose 6-dehydrogenase -2.6 -3.7 1.7 1.9 qpx_c7532 CBJ28343 1.02E-25
Integrin-related protein 1 -2.0 -1.4 1.5 1.5 qpx_c5688 EGB09976 3.30E-07
Integrin-related protein 2 -2.2 -2.2 1.6 1.5 qpx_lrc9075 ZP_08823332 9.08E-08
Syntaxin -2.5 -2.6 1.6 1.8 qpx_c324 EGB05290 1.40E-15
  1. Mean fold changes are shown (3 biological replicates).
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