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Table 5 Comparative analysis for the presence/absence of Ti-based virulence genes in Ensifer adhaerens OV14, Agrobacterium tumefaciens C58, and Sinorhizobium meliloti 1021

From: Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes

Gene id eggNOG OV14 gene C58 gene 1021 gene No. species No. protein Virulence function Product
In C58   Copy number Copy number Copy number In NOG In NOG In C58  
virA aproNOG05576 0 1 0 7 7 vir operon regulation Sensor kinase
virG aproNOG04872 0 1 0 9 10 vir operon regulation Regulatory protein
virB1 aproNOG10673 0 1 0 21 22 Type IV secretion Type IV secretion system lytic transglycosylase
virB2 aproNOG12925 0 1 0 8 10 Type IV secretion Type IV secretion system Pilin subunit protein
virB3 aproNOG08388 0 2 1 20 27 Type IV secretion Type IV secretion system Pilin-like protein
virB4 aproNOG02013 2 2 1 71 117 Type IV secretion Type IV secretion system ATPase
virB5 N/A 0 1 0 N/A N/A Type IV secretion Type IV secretion system protein
virB6 N/A 0 1 0 N/A N/A Type IV secretion Type IV secretion system protein
virB7 N/A 0 1 0 N/A N/A Type IV secretion Type IV secretion system protein
virB8 N/A 0 1 0 N/A N/A Type IV secretion Type IV secretion system protein
virB9 aproNOG01070 0 1 1 20 29 Type IV secretion Type IV secretion system protein
virB10 aproNOG01880 0 2 1 25 32 Type IV secretion Type IV secretion system ATP energy sensor
virB11 aproNOG02544 1 2 1 70 87 Type IV secretion Type IV secretion system ATPase
virC1 aproNOG17216 0 1 0 6 6 Generation of the T-strand DNA-binding protein
virC2 N/A 0 1 0 N/A N/A Generation of the T-strand Hypothetical protein
virD1 aproNOG18795 0 1 0 5 5 T-DNA processing Endonuclease accessory protein
virD2 aproNOG06745 0 1 0 13 16 T-DNA processing Endonuclease
virD3 aproNOG10158 0 1 0 14 14 T-DNA processing Hypothetical protein
virD4 aproNOG03383 1 2 0 72 121 Type IV secretion Coupling protein
virD5 N/A 0 1 0 N/A N/A T-DNA processing Hypothetical protein
virE0 N/A 0 1 0 N/A N/A Generation of the T-strand Hypothetical protein
virE1 N/A 0 1 0 N/A N/A Generation of the T-strand Chaperone protein
virE2 N/A 0 1 0 N/A N/A Generation of the T-strand ss-DNA binding protein
virE3 N/A 0 1 0 N/A N/A Generation of the T-strand Hypothetical protein
virF N/A 0 1 0 N/A N/A Effector Hypothetical protein
virH1 aproNOG14518 0 1 0 3 3 Non-essential Hypothetical protein
virH2 aproNOG15187 0 1 0 3 3 Non-essential Hypothetical protein
virK aproNOG20065 0 1 0 4 4 Non-essential Hypothetical protein