Table 5 Comparative analysis for the presence/absence of Ti-based virulence genes in Ensifer adhaerens OV14, Agrobacterium tumefaciens C58, and Sinorhizobium meliloti 1021
Gene id | eggNOG | OV14 gene | C58 gene | 1021 gene | No. species | No. protein | Virulence function | Product |
|---|---|---|---|---|---|---|---|---|
In C58 | Â | Copy number | Copy number | Copy number | In NOG | In NOG | In C58 | Â |
virA | aproNOG05576 | 0 | 1 | 0 | 7 | 7 | vir operon regulation | Sensor kinase |
virG | aproNOG04872 | 0 | 1 | 0 | 9 | 10 | vir operon regulation | Regulatory protein |
virB1 | aproNOG10673 | 0 | 1 | 0 | 21 | 22 | Type IV secretion | Type IV secretion system lytic transglycosylase |
virB2 | aproNOG12925 | 0 | 1 | 0 | 8 | 10 | Type IV secretion | Type IV secretion system Pilin subunit protein |
virB3 | aproNOG08388 | 0 | 2 | 1 | 20 | 27 | Type IV secretion | Type IV secretion system Pilin-like protein |
virB4 | aproNOG02013 | 2 | 2 | 1 | 71 | 117 | Type IV secretion | Type IV secretion system ATPase |
virB5 | N/A | 0 | 1 | 0 | N/A | N/A | Type IV secretion | Type IV secretion system protein |
virB6 | N/A | 0 | 1 | 0 | N/A | N/A | Type IV secretion | Type IV secretion system protein |
virB7 | N/A | 0 | 1 | 0 | N/A | N/A | Type IV secretion | Type IV secretion system protein |
virB8 | N/A | 0 | 1 | 0 | N/A | N/A | Type IV secretion | Type IV secretion system protein |
virB9 | aproNOG01070 | 0 | 1 | 1 | 20 | 29 | Type IV secretion | Type IV secretion system protein |
virB10 | aproNOG01880 | 0 | 2 | 1 | 25 | 32 | Type IV secretion | Type IV secretion system ATP energy sensor |
virB11 | aproNOG02544 | 1 | 2 | 1 | 70 | 87 | Type IV secretion | Type IV secretion system ATPase |
virC1 | aproNOG17216 | 0 | 1 | 0 | 6 | 6 | Generation of the T-strand | DNA-binding protein |
virC2 | N/A | 0 | 1 | 0 | N/A | N/A | Generation of the T-strand | Hypothetical protein |
virD1 | aproNOG18795 | 0 | 1 | 0 | 5 | 5 | T-DNA processing | Endonuclease accessory protein |
virD2 | aproNOG06745 | 0 | 1 | 0 | 13 | 16 | T-DNA processing | Endonuclease |
virD3 | aproNOG10158 | 0 | 1 | 0 | 14 | 14 | T-DNA processing | Hypothetical protein |
virD4 | aproNOG03383 | 1 | 2 | 0 | 72 | 121 | Type IV secretion | Coupling protein |
virD5 | N/A | 0 | 1 | 0 | N/A | N/A | T-DNA processing | Hypothetical protein |
virE0 | N/A | 0 | 1 | 0 | N/A | N/A | Generation of the T-strand | Hypothetical protein |
virE1 | N/A | 0 | 1 | 0 | N/A | N/A | Generation of the T-strand | Chaperone protein |
virE2 | N/A | 0 | 1 | 0 | N/A | N/A | Generation of the T-strand | ss-DNA binding protein |
virE3 | N/A | 0 | 1 | 0 | N/A | N/A | Generation of the T-strand | Hypothetical protein |
virF | N/A | 0 | 1 | 0 | N/A | N/A | Effector | Hypothetical protein |
virH1 | aproNOG14518 | 0 | 1 | 0 | 3 | 3 | Non-essential | Hypothetical protein |
virH2 | aproNOG15187 | 0 | 1 | 0 | 3 | 3 | Non-essential | Hypothetical protein |
virK | aproNOG20065 | 0 | 1 | 0 | 4 | 4 | Non-essential | Hypothetical protein |