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Table 3 Summary of newly identified 55 novel miRNAs in the five wheat libraries or tissues

From: Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)

miRNA

Mature sequence(5′→3′)☆

Length (nt)

Abundance (RPM)§

Seedlings

Flag leaves

Developing seeds*

tae-miR1120b

UUCUUAUAUUGUGGGACAGAG

21

26

131

56

tae-miR1120c

UAAUAUAAGAACGUUUUUGAC

21

0

24

0

tae-miR1122b

AGACUUAUAUGUAGGAACGGA

21

0

0

10

tae-miR1122c

UCUAAUAUUAUGGGACGGAGG

21

4

8

4

tae-miR1127b

ACAAGUAUUUCUGGACGGAGG

21

0

0

17

tae-miR1130b

UCUUAUAUUAUGGGACGGAGG

21

0

10

0

tae-miR1137b

UCCGUUCCAGAAUAGAUGACC

21

9

13

28

tae-miR167c

UGAAGCUGCCAGCAUGAUCUGC

22

67

173

88

tae-miR1847

ACCUGCAGUUGGGCCAAUGAC

21

47

106

20

tae-miR2275

UUUGGUUUCCUCCAAUAUCUCG

22

0

0

12

tae-miR396

AACUGUGAACUCGCGGGGAUG

21

6

11

35

tae-miR397

UCACCGGCGCUGCACACAAUG

21

2

92

5

tae-miR5048

UUUGCAGGUUUUAGGUCUAAGU

22

1,142

1,274

0

tae-miR5049

AAUAUGGAUCGGAGGGAGUAC

21

1

13

1

tae-miR5062

UGAACCUUAGGGAACAGCCGCAU

23

510

1,509

2,932

tae-miR5175

UUCCAAAUUACUCGUCGUGGU

21

0

129

34

tae-miR5384

UGAGCGCGCCGCCGUCGAAUG

21

0

12

0

tae-miR6197

UCUGUAAACAAAUGUAGGACG

21

29

71

131

tae-miR7757

AUAAAACCUUCAGCUAUCCAUC

22

67

83

78

tae-miR9652-3P

AAGCUUAAUGAGAACAUGUG

20

0

14

1

tae-miR9652-5P

CCUGUUUGUCAUUAAGUUUCUU

22

2

0

10

tae-miR9653

UUUGAGACUUUGGCCAUGGCC

21

0

0

15

tae-miR9654a

UUCUGAAAGGCUUGAAGCGAAU

22

0

0

135

tae-miR9654b

UUCCGAAAGGCUUGAAGCGAAU

22

1

3

34

tae-miR9655

CAAGGGAAGGAAGUAGCCAAC

21

15

1

1047

tae-miR9656

CUUCGAGACUCUGAACAGCGG

21

0

0

18

tae-miR9657a

UGUGCUUCCUCGUCGAACGGU

21

0

0

46

tae-miR9657b

UUCGUCGGAGAAGCAUGUUGC

21

0

0

60

tae-miR9657c

CGUGCUUCCUCGUCGAACGGU

21

16

39

29

tae-miR9658

AUCGUUCUGGGUGAAUAGGCC

21

7

10

299

tae-miR9659

UCCAAUGGUUGUUCACGGCAUC

22

0

0

248

tae-miR9660

UUGCGAGCAACGGAUGAAUC

20

0

0

21

tae-miR9661

UGAAGUAGAGCAGGGACCUCA

21

2

1

27

tae-miR9662a

UUGAACAUCCCAGAGCCACCG

21

402

488

898

tae-miR9662b

UGAACAUCCCAGAGCCACCGG

21

0

488

821

tae-miR9663

AAGCGUAGUCGAACGAAUCUG

21

1,634

5,562

10,441

tae-miR9664

UUGCAGUCCUCGAUGUCGUAG

21

243

305

1122

tae-miR9665

GCUAGCAGUGUAAACUCAAAUCA

23

0

0

9

tae-miR9666a

CGGUAGGGCUGUAUGAUGGCGA

22

46

47

1,519

tae-miR9666b

CGGUUGGGCUGUAUGAUGGCGA

22

8,913

29

477

tae-miR9666c

GCCAUCAUACGUCCAACCGUG

21

10

0

0

tae-miR9667

AAAUAUGGCAAACAAUGAAUG

21

0

0

27

tae-miR9668

CCAAUGACAAGUAUUUUCGGA

21

0

10

9

tae-miR9669

UACUGUGGGCACUUAUUUGAC

21

9

0

0

tae-miR9670

AGGUGGAAUACUUGAAGAAGA

21

140

218

409

tae-miR9671

UGACUUUACACAACUGUCCGGC

22

6

13

0

tae-miR9672

CCACGACUGUCAUUAAGCAUC

21

92

366

36

tae-miR9673

UAAGAAGCAAAUAGCACAUG

20

4

14

11

tae-miR9674a

GCAUCAUCCAUCCUACCAUUC

21

143

346

337

tae-miR9674b

AUAGCAUCAUCCAUCCUACCC

21

362

453

817

tae-miR9675

UUUAUGAUCACUCUCGUUUUG

21

0

32

0

tae-miR9676

UGGAUGUCAUCGUGGCCGUACA

22

57

63

19

tae-miR9677

UGGCCGUUGGUAGAGUAGGAGA

22

1

9

344

tae-miR9678

UCUGGCGAGGGACAUACACUGU

22

4

0

411

tae-miR9679

CAGAACCAGAAUGAGUAGCUC

21

15

32

59

  1. ☆The mature sequence bold were previously described in wheat (Wei et al., 2009 [26]; Meng et al., 2013 [24]).
  2. §Abundance reflected by normalised reads (reads per million of total miRNA reads, RPM).
  3. *Including 5-d seeds, 10-d seeds, and 20-d seeds, thereby the abundance referring to the total of abundance of each miRNA in the three stages of developing seeds.
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BMC Genomics

ISSN: 1471-2164

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