Integrating bioinformatic resources to predict transcription factors interacting with cis-sequences conserved in co-regulated genes

Table 1 Cis -sequences selected for further experimental and bioinformatics analysis

Seq. Nr.	Selected cis-element	Motif group	Query	Gene	Position
1	AACGTGGG	I	roots6h_1	At4g22610	−491
2	GCACGTGGAG	I	shoots1hr_9	At4g15210	−312
3	GCTGCCGGAGA	II	shoots24hr_2	At4g17470	−295
4	GCCACGTCAGC	II	shoots24hr_2	At5g05250	−526
5	GGTTGTGGT	III	roots24hr_5	At1g21100	−839
6	ACCAAACAT	III	shoots0.25hr_16	At5g42760	−26
7	CACCTAAC	III	roots0.5hr_16	At2g22880	−288
8	TCGGACCAA	III	rootsshoots1hr_2	At5g20230	−638
9	CTCTCTCAC	IV	roots0.5hr_8	At5g20230	−934
10	ATGTGATGC	V	shoots6hr12hr_2	At1g52410	−15
11	GCATCACCC	V	shoots6hr12hr_3	At2g43510	−873
12	CCAACTAA	VI	shoots12hr24hr_6	At2g43510	−355
12a	CAAACAAA	VI	shoots12hr24hr_6	At3g28220	−155/-924
13	TCTCCTCCAC	VII	shoots1hr_32	At5g45340	−49
14	CTTTCCCC	VII	rootsshoots0.5hr_36	At1g76650	−9
15	CCTCCTTCT	VII	rootsshoots0.5hr_21	At1g20510	−37/-745

Proveniences of selected motif sequences. Query refers to Figure 2. The genes and positions relative to transcription start refer to the genomic context of the cloned cis-elements.

ISSN: 1471-2164