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Table 1 RNA-Seq statistics

From: Deep mRNA sequencing reveals stage-specific transcriptome alterations during microsclerotia development in the smoke tree vascular wilt pathogen, Verticillium dahliae

Sample Insert size (bp)a Total readsb Mapped readsc Perfect match readsd Unmapped readse Reads mapped to genesf
CO 193.341 bp 27056079 23660245 (87.45%g) 19767391 (73.06%g) 3395834 (12.55%g) 15750739 (58.22%g/66.57%h)
GC 195.521 bp 27056223 23268435 (86.00%) 19630309 (72.55%) 3787788 (14.00%) 15904017 (58.78%/68.35%)
MS1 188.009 bp 26190923 22036154 (84.14%) 18611864 (71.06%) 4154769 (15.86%) 14344871 (54.77%/65.10%)
MS2 194.213 bp 25596902 21727696 (84.88%) 18413763 (71.94%) 3869206 (15.12%) 14297493 (55.86%/65.80%)
MS3 195.993 bp 26410805 22551758 (85.39%) 19100267 (72.32%) 3859047 (14.61%) 14932675 (56.54%/66.22%)
MS4 190.443 bp 26190969 22745470 (86.84%) 19246089 (73.48%) 3445499 (13.16%) 14879393 (56.81%/65.42%)
Total 158501901 135989758 (85.80%) 114769683 (72.41%) 22512143 (14.20%) 90109188 (56.85%/66.26%)
  1. aThe length of fragments used for sequencing.
  2. bThe number of reads generated from sequencing after filtering low quality reads (Q ≤ 5).
  3. cThe number of reads mapped to the reference genome within 2 bp mismatch.
  4. dThe number of reads mapped to the reference genome with no mismatch.
  5. eThe number of reads that could not be mapped to the reference genome within 2 bp mismatch
  6. fThe number of reads mapped to the annotated genes within 2 bp mismatch.
  7. gThe percentages of reads account for the total reads.
  8. hThe percentages of reads account for the mapped reads.