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Table 2 Distribution of gene expression values among developmental stages examined

From: Deep mRNA sequencing reveals stage-specific transcriptome alterations during microsclerotia development in the smoke tree vascular wilt pathogen, Verticillium dahliae

Sample

FPKMa > 0

0 < FPKM < =1

1 < FPKM < =10

10 < FPKM < =100

FPKM > 100

CO

9412 (89.34%b)

1190 (12.64%c)

2879 (30.59%c)

4319 (45.89%c)

1024 (10.88%c)

GC

9443 (89.63%)

1188 (12.58%)

2388 (25.29%)

4805 (50.88%)

1062 (11.25%)

MS1

9747 (92.52%)

929 (9.53%)

2335 (23.96%)

5314 (54.52%)

1169 (11.99%)

MS2

9858 (93.57%)

757 (7.68%)

2202 (22.34%)

5696 (57.78%)

1202 (12.19%)

MS3

9933 (94.29%)

711 (7.16%)

2199 (22.14%)

5756 (57.95%)

1267 (12.76%)

MS4

9939 (94.34%)

672 (6.76%)

2158 (21.71%)

5743 (57.78%)

1366 (13.74%)

  1. aFPKM, fragments per kilobase of transcript per million mapped fragments.
  2. bThe percentage of genes accounting for all annotated genes in V. dahliae (10,535).
  3. cThe percentage of genes accounting for all expressed genes in each library.