Table 3 Parameters of small RNA sequences from CK, CM and CH
From: MicroRNA profiling of rats with ochratoxin A nephrotoxicity
Dose of gavage | Reads types | Reads number | Percentage |
|---|---|---|---|
CK | Total reads number | 24361780 | 100% |
Low quality | 18020 | 0.07% | |
Adaptor3 null | 1258473 | 5.17% | |
Insert null | 0 | 0% | |
5′ adaptor contaminants | 7165 | 0.03% | |
small.txt, size < 18 nt | 1107061 | 4.54% | |
polyA | 4660 | 0.02% | |
High Quality (size ≥ 18 nt) | 21966401 | 90.17% | |
CM | Total reads number | 21752336 | 100% |
Low quality | 15999 | 0.07% | |
Adaptor3 null | 1838914 | 8.45% | |
Insert null | 0 | 0% | |
5′ adaptor contaminants | 4953 | 0.02% | |
small.txt, size < 18 nt | 756277 | 3.48% | |
polyA | 4045 | 0.02% | |
High Quality (size ≥ 18 nt) | 19132148 | 87.95% | |
CH | Total reads number | 24515287 | 100% |
Low quality | 20684 | 0.08% | |
Adaptor3 null | 1179046 | 4.81% | |
Insert null | 0 | 0% | |
5′ adaptor contaminants | 5293 | 0.02% | |
small.txt, size < 18 nt | 865014 | 3.53% | |
polyA | 3918 | 0.02% | |
High Quality (size ≥ 18 nt) | 22441332 | 91.54% |