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Table 4 List of 17 Sclerotinia -specific effector candidates revealed by pattern and fold recognition searches

From: Secretome analysis reveals effector candidates associated with broad host range necrotrophy in the fungal plant pathogen Sclerotinia sclerotiorum

 

Length

C-score

TM score

Analog model

Selected analog description

SS1G_00780

115

-3.14

0.610

2PFV

S. cerevisiae Exo70 with additional residues to 2.1 Angstrom resolution

SS1G_01817

116

-2.53

0.503

2R5M

Crystal Structure of the two MBT repeats from Sex-Comb on Midleg (SCM) in complex with peptide R-(me)K-S

SS1G_03830

155

-4.41

0.460

3GH1

Predicted nucleotide-binding protein from Vibrio cholerae

SS1G_03878

132

-3.79

0.645

1NI3

Schizosaccharomyces pombe YchF GTPase

SS1G_04309

177

-4.63

0.461

2QPD

Crystal structure of SusD-like carbohydrate binding protein (YP_001298396.1) from

SS1G_06504

93

-2.38

0.503

4HOI

Bacteroides vulgatus ATCC 8482 at 1.70 A resolution

SS1G_07354

129

-3.63

0.589

1UG3

Crystal structure of PAS domain from the mouse EAG1 potassium channel C-terminal portion of human eIF4GI

SS1G_07543

273

-4.27

0.706

2FX5

Pseudomonas mendocina lipase

SS1G_08860

141

-3.96

0.526

1XLY

X-ray structure of the RNA-binding protein SHE2p

SS1G_09512

164

-3.65

0.546

3LE0

Lectin Domain of Lectinolysin complexed with Glycerol

SS1G_10915

136

-4.12

0.512

3M1C

Crystal structure of the conserved herpesvirus fusion regulator complex gH-gL

SS1G_11461

114

-3.2

0.526

2 HP3

Penicillin-binding protein 2b (PBP-2b) from Streptococcus pneumoniae (strain 5204)

SS1G_12769

88

-2.32

0.585

3S63

Saposin-like protein Na-SLP-1

SS1G_13016

124

-2.76

0.555

3APO

ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5

SS1G_13142

131

-4.25

0.506

1DCU

Oxidized pea fructose-1,6-bisphosphate phosphatase

SS1G_13235

114

-3.55

0.585

3D3M

C-terminal region of Death Associated Protein 5(DAP5)

SS1G_14000

159

-4.43

0.578

2C9K

Structure of the functional form of the mosquito larvicidal Cry4Aa toxin from Bacillus thuringiensis at a 2.8-angstrom resolution

  1. C-score is a confidence score for estimating the quality of models predicted by I-TASSER ranging from -5 (low confidence) to 2 (high confidence). TM score is a quality score for the superimposition of 3D models calculated with TM-align with values in [0;1]. A TM-score >0.5 generally corresponds to the same fold in SCOP/CATH.