Genome-wide identification of heat shock proteins (Hsps) and Hsp interactors in rice: Hsp70s as a case study

BMC Genomics

Table 3 Numbers of Hsps identified in this paper

Families	sHsp	Hsp60	Hsp70	Hsp90	Hsp100	Total
First step	23	4	8	3	3	41
Second step	14	4	7	3	3	31
Third step	12	3	6	3	3	27

First step: Proteins that were annotated as heat shock proteins and contained the specific domains of heat shock proteins were downloaded from Uniprot database; Second step: Hsp candidates, whose expression value was absent in GSE6901 or GSE14275, were filtered out; Third step: Candidates, whose expression patterns were strongly correlated with the patterns of the HR probe-sets, were ultimately recognized as heat shock proteins.

ISSN: 1471-2164