Table 1 Summary of the Hidden Markov Models (HMMs) used to screen for glycosyltransferases in the proteomes of Campylobacter jejuni NCTC 11168 and Lactobacillus rhamnosus GG
From: A network-based approach to identify substrate classes of bacterial glycosyltransferases
HMM group | Description | Database | Reference |
|---|---|---|---|
I | Rossmann-fold domains | SUPERFAMILY | Ha et al., 2001 [16] |
Egelund et al., 2004 [10] | |||
Lairson et al., 2008 [3] | |||
Hansen et al., 2010 [8] | |||
II | Sugar transferase | SUPERFAMILY | Egelund et al., 2004 [10] |
Hansen et al., 2010 [8] | |||
UDP-Glycosyltransferase | SUPERFAMILY | Egelund et al., 2004 [10] | |
Hansen et al., 2010 [8] | |||
III | Transglycosylase (PF00912) | Pfam/CAZy | Di Guilmi et al., 2003 [17] |
Glycosyltransferase WecB/TagA/CpsF (PF03808) | Pfam/CAZy | Maldonado-Barragán et al., 2011 [18] | |
Bacterial sugar transferase (PF02397) | Pfam | Yoshida et al., 1998 [19] | |
Provencher et al., 2003 [21] | |||
Oligosaccharyltransferase STT3 subunit (PF02516) | Pfam/CAZy | Baïet et al., 2011 [22] | |
DAD family (PF02109) | Pfam | Silberstein et al., 1995 [24] | |
OST3/OST6 family (PF04756) | Pfam/CAZy | Knauer et al., 1999 [23] | |
Glycosyltransferase family 25 (PF01755) | Pfam/CAZy | Campbell et al., 1997 [25] | |
Glycosyltransferase family 28 (PF04101) | Pfam/CAZy | Mengin-Lecreulx et al., 1991 [26] | |
Glycosyltransferase family 9 (PF01075) | Pfam/CAZy | Campbell et al., 1997 [25] |