Table 1 Statistics of the viral assemblies
Assembly | Largest contig (bp) | N50 (bp) | # contigs | % chimeric contigs | % reads assembled | % reads assembled on their original genomes | % reads within a viral bacterial hit | Genomes recovered | % contig identity against its original genome (median) |
|---|---|---|---|---|---|---|---|---|---|
Celera 02 | 15372 | 1729 | 5395 | 15.31 | 31.06 | 96.31 | 0.35 | 0 | 98.32 |
Celera 05 | 15372 | 2155 | 4216 | 18.43 | 32.4 | 95.97 | 0.35 | 0 | 99.09 |
Celera meta | 134824 | 4816 | 3165 | 32.10 | 52.47 | 89.80 | 0.14 | 1 | 99.00 |
Genovo | 138337 | 2357 | 12258 | 18.71 | 98.51 | 78.73 | 0.25 | 0 | 98.00 |
Minimo 100/98 | 1532 | 744 | 9763 | 4.94 | 3.98 | 94.83 | 8.18 | 0 | 97.63 |
Minimo 60/95 | 2603 | 471 | 66769 | 2.90 | 37.00 | 97.41 | 3.37 | 0 | 97.00 |
Newbler 100/98 | 78267 | 1298 | 4405 | 20.69 | 44.41 | 94.63 | 0.38 | 0 | 99.55 |
Newbler 60/95 | 137947 | 2508 | 7143 | 20.84 | 90.08 | 93.45 | 0.23 | 1 | 99.00 |
Velvet | 1820 | 426 | 10653 | 4.76 | 4.96 | 95.79 | 6.39 | 0 | 97.42 |
Meta velvet | 1820 | 426 | 10640 | 4.71 | 4.96 | 95.91 | 6.41 | 0 | 97.00 |
Optimal | 185683 | 3604 | 10657 | 0.00 | 97.99 | 99.62 | 0.24 | 9 | 100.00 |