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Table 2 B. thailandensis sRNAs identified from microarray analysis of expression in IGRs

From: Differential expression of small RNAs from Burkholderia thailandensis in response to varying environmental and stress conditions

  Expressed region Fold change   BLAST
sRNA Chr 5′ Locus Genes Length First probe Last probe Antibiotic distribution
BTH_s1 1 BTH_I0225 >< 151 259648 259799 0.45 Btpm
BTH_s2 1 BTH_I0498 <> 147 553257 553404 0.74 Btpm
BTH_s3 1 BTH_I0572 >< 50 652705 652755 −0.56 Bt
BTH_s4 1 BTH_I0629 <> 77 725000 725077 −1.53 Bt
BTH_s5 1 BTH_I0805 >< 72 919535 919607 −0.72 Bt
BTH_s6 1 BTH_I0981 >< 92 1114896 1114988 −0.83 Bt
BTH_s7 1 BTH_I0986 >> 187 1123855 1124042 0.34 Bt
BTH_s8 1 BTH_I1002 << 57 1139418 1139475 −0.09 Bt
RnaseP 1 BTH_I1231 >< 413 1381221 1381634 −0.03 conserved
BTH_s10 1 BTH_I1420 >> 50 1603625 1603675 1.79 Bt
BTH_s11 1 BTH_I1430 >> 304 1614533 1614837 −0.31 Btpm
BTH_s12 1 BTH_I1458 >< 30 1655354 1655384 −3.91 Btpm
BTH_s13 1 BTH_I1526 <> 283 1728308 1728591 1.98 Btpm+
BTH_s14 1 BTH_I1552 <> 263 1754006 1754269 −1.13 Btpm
BTH_s15 1 BTH_I1641 >> 161 1850688 1850849 −0.44 Btpm+
BTH_s16 1 BTH_I1756 <> 122 1967019 1967141 1.98 Btpm
BTH_s17 1 BTH_I1826 >> 184 2052202 2052386 −0.48 Btpm
BTH_s18 1 BTH_I1973 >< 29 2237631 2237660 −0.60 Bt
BTH_s19 1 BTH_I2094 <> 127 2372778 2372905 1.84 Btpm+
small SRP 1 BTH_I2218 <> 14 2494993 2495007 −0.55 conserved
BTH_s21 1 BTH_I2685 >> 51 3066928 3066979 1.83 Bt
BTH_s22 1 BTH_I2764 >< 34 3174991 3175025 0.02 Bt
BTH_s23 1 BTH_I2791 >< 194 3207088 3207282 −0.97 Bt
BTH_s24 1 BTH_I2908 >> 67 3344035 3344102 0.51 Btpm+
BTH_s25 1 BTH_I3195 <> 54 3642110 3642164 −1.32 Btpm+
BTH_s26 2 BTH_II0111 <> 59 126516 126575 −0.05 Bt
BTH_s27 2 BTH_II0236 >> 88 287804 287892 1.70 Btpm
BTH_s28 2 BTH_II0378 >> 230 448466 448696 −0.39 Btp
BTH_s29 2 BTH_II0540 >> 169 641739 641908 1.94 Btpm
BTH_s30 2 BTH_II0674 >> 128 789481 789609 0.00 Btpm+
BTH_s31 2 BTH_II0686 >> 143 803355 803498 −1.24 Btpm+
BTH_s32 2 BTH_II0954 << 38 1133460 1133498 0.08 Bt
BTH_s33 2 BTH_II1164 >< 52 1355194 1355246 −0.29 Btpm
BTH_s34 2 BTH_II1180 >< 113 1380009 1380122 −0.95 Bt
BTH_s35 2 BTH_II1417 >> 133 1672484 1672617 3.91 Btpm
BTH_s36 2 BTH_II1508 >> 104 1778103 1778207 4.57 Btpm
BTH_s37 2 BTH_II1685 << 99 2043861 2043960 −0.71 Bt
BTH_s38 2 BTH_II1727 >> 183 2091083 2091266 −0.97 Bt
BTH_s39 2 BTH_II2030 >< 70 2477704 2477774 0.16 Btpm+
BTH_s40 2 BTH_II2171 >< 107 2670574 2670681 −0.29 Bt
  1. Fold change in response to antibiotics is depicted in Log 2. For BLAST distribution, Bt – found only in B. thailandensis; Btp – found in B. thailandensis and B. pseudomallei; Btpm – found in B. thailandensis, B. pseudomallei, and B. mallei; Btpm + - found in B. thailandensis, B. pseudomallei, B. mallei, and at least one other additional Burkholderia species; and conserved – found in all 16 Burkholderia strains tested, including B. thailandensis, B. pseudomallei, B. mallei, B. phytofirmans, B. phymatum, B. phenoliruptrix, B. xenovorans, B. rhizoxinica, B. gladioli, B. glumae, B. vietnamiensis, B ambifaria, B. cenocepacia, B multivorans, and Burkholderia sp.