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Table 2 List of gene sets commonly regulated by PTPRJ and PTPN11 based on gene expression

From: In silico analyses reveal common cellular pathways affected by loss of heterozygosity (LOH) events in the lymphomagenesis of Non-Hodgkin’s lymphoma (NHL)

Gene set name K k k/K* P value
KEGG_Pathways_in_cancer 328 10 0.0305 6.86 × 10-7
KEGG_Focal_adhesion 201 8 0.0398 1.70 × 10-6
KEGG_ERBB_Signaling_pathway 87 6 0.069 1.81 × 10-6
KEGG_Cytokine_cytokine_receptor_interaction 267 8 0.03 1.42 × 10-5
KEGG_Neurotrophin_signaling_pathway 126 6 0.0476 1.57 × 10-5
KEGG_Adherens_junction 75 5 0.0667 1.76 × 10-5
KEGG_Prostate_cancer 89 5 0.0562 4.06 × 10-5
KEGG_JAK_Stat_signaling_pathway 155 6 0.0387 5.11 × 10-5
KEGG_Endometrial_cancer 52 4 0.0769 7.76 × 10-5
KEGG_Non_small_cell_lung_cancer 54 4 0.0741 9.01 × 10-5
KEGG_T_Cell_receptor_signaling_pathway 108 5 0.0463 1.03 × 10-4
KEGG_Endocytosis 183 6 0.0328 1.29 × 10-4
KEGG_Chemokine_signaling_pathway 190 6 0.0316 1.59 × 10-4
KEGG_Glioma 65 4 0.0615 1.87 × 10-4
KEGG_Renal_cell_carcinoma 70 4 0.0571 2.49 × 10-4
KEGG_Thyroid_cancer 29 3 0.1034 2.81 × 10-4
KEGG_VEGF_signaling_pathway 76 4 0.0526 3.42 × 10-4
KEGG_Leukocyte_transendothelial_migration 118 4 0.0339 1.80 × 10-4
KEGG_Acute_myeloid_leukemia 60 3 0.05 2.40 × 10-3
  1. *k/K is the ratio between the number of genes in overlap (k) and the number of genes in gene set (K).