Table 3 Summary of characterized MCF7 palindrome spacers
From: GAP-Seq: a method for identification of DNA palindromes
Chromosome | Assembled 454 palindrome contigs | 454 palindrome rank score | Spacer size (bp) | Spacer location | Insertion or deletion in Spacer |
|---|---|---|---|---|---|
Chr15 (q21.1) | 47,528,609-47,550,373 | 2.41 | 467 | 47,528,051-47,528,326 | Insertion: Chr16(-):185Â bp |
44,946,106-44,945,921 | |||||
Chr15 (q21.3) | 52,336,749-52,346,086 | 2.53 | 657 | 52,346,284-52,346,941 | None |
Chr8 (q21.2) | 86,478,506-86,486,590 | 2.01 | 2286 | 86,417,409-86,478,509 | Deletion: Chr8(+): 58,813Â bp |
86,418,384-86,477,197 | |||||
Chr1 (q31.3) | 196,632,634-196,644,263 | 1.25 | 1555 | 196,630,725-196,632,280 | None |
Chr20 (q13.2) | 51,618,339-51,633,176 | 0.83 | 430 | 51,615,731-51,616,160 | None |