Skip to main content

Table 1 Data summary of sequenced small RNAs based on DSAP

From: MicroRNA expression profiling of the fifth-instar posterior silk gland of Bombyx mori

  Q1 Q2 B1 B2 QB1 QB2 BQ1 BQ2 R1 J1
Total reads 18707473 18633295 18556476 18499427 17947940 16942708 17449851 17905942 10508573 12079631
Cleaned sequence tags 901684 674947 810182 622202 633421 617616 857114 617471 1162861 816340
Reads in cleaned sequence tags 10044506 10693830 10790311 9085018 7461204 8113977 9405884 9159736 8614699 9822808
% reliable reads # 53.69 57.39 58.15 49.11 41.57 47.89 53.90 51.15 81.98 81.32
Unique Sequence Clusters (USC) 901684 674947 810182 622202 633421 617616 857114 617471 1162861 816340
Matched ncRNA in Rfam 690 608 673 596 642 569 701 602 739 693
USC matched to Rfam 134580 97673 122849 105997 89704 92104 127959 101047 154898 145107
Reads matched to Rfam 2729256 2440852 2908825 2573860 1644409 2172466 2133486 2565135 1108916 1386447
% reads matched to Rfam 27.17 22.82 26.96 28.33 22.04 26.77 22.68 28 12.87 14.11
Matched miRNAs in miRBase 181 170 182 157 181 150 202 168 239 220
USC matched to miRBase 1411 1167 1216 927 1174 817 1643 1016 2540 2089
Reads matched to miRBase 406154 744285 540458 277369 486835 339576 544337 310026 1486269 1576622
% reads matched to miRNAs 4.04 6.96 5.01 3.05 6.52 4.19 5.79 3.38 17.25 16.05
USC Unmatched reads 765693 576107 686117 515278 542543 524695 727512 515408 1005423 669144
  1. Note: #Percentage of reliable reads = (Number of reads in cleaned sequence tags/Number of total reads)*100.