Table 3 Frequencies of haplotypes directly observed by LHA in 3-SNP blocks from the CEU_TRIO and HNC_62 (aggregated into normal and tumor tissues)
From: Direct observation of genomic heterogeneity through local haplotyping analysis
Subject | Total 3-blocks | Number of haplotypes in the block | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | ||
NA12878 | 108,968 | 12,090 (11.1%) | 13,346 (12.2%) | 78,392 (71.9%) | 4,192 (3.8%) | 752 (0.7%) | 181 (0.2%) | 14 (0%) | 0 (0%) | 1 (0%) |
NA12891 | 107,888 | 13,278 (12.3%) | 18,799 (17.4%) | 70,454 (65.3%) | 4,367 (4.0%) | 789 (0.7%) | 178 (0.2%) | 20 (0%) | 3 (0%) | 0 (0%) |
NA12892 | 111,699 | 16,198 (14.5%) | 21,906 (19.6%) | 68,915 (61.7%) | 3,931 (3.5%) | 613 (0.5%) | 127 (0.1%) | 9 (0%) | 0 (0%) | 0 (0%) |
HNC-Normal | 17,669 | 2,660 (15.1%) | 2,025 (11.5%) | 12,201 (69.1%) | 521 (2.9%) | 112 (0.6%) | 115 (0.7%) | 24 (0%) | 11 (0%) | 0 (0%) |
HNC-Tumor | 18,272 | 2,654 (14.5%) | 2,239 (12.3%) | 12,508 (68.5%) | 573 (3.1%) | 145 (0.8%) | 122 (0.7%) | 19 (0%) | 12 (0%) | 0 (0%) |