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Table 3 Frequencies of haplotypes directly observed by LHA in 3-SNP blocks from the CEU_TRIO and HNC_62 (aggregated into normal and tumor tissues)

From: Direct observation of genomic heterogeneity through local haplotyping analysis

Subject Total 3-blocks Number of haplotypes in the block
   0 1 2 3 4 5 6 7 8
NA12878 108,968 12,090 (11.1%) 13,346 (12.2%) 78,392 (71.9%) 4,192 (3.8%) 752 (0.7%) 181 (0.2%) 14 (0%) 0 (0%) 1 (0%)
NA12891 107,888 13,278 (12.3%) 18,799 (17.4%) 70,454 (65.3%) 4,367 (4.0%) 789 (0.7%) 178 (0.2%) 20 (0%) 3 (0%) 0 (0%)
NA12892 111,699 16,198 (14.5%) 21,906 (19.6%) 68,915 (61.7%) 3,931 (3.5%) 613 (0.5%) 127 (0.1%) 9 (0%) 0 (0%) 0 (0%)
HNC-Normal 17,669 2,660 (15.1%) 2,025 (11.5%) 12,201 (69.1%) 521 (2.9%) 112 (0.6%) 115 (0.7%) 24 (0%) 11 (0%) 0 (0%)
HNC-Tumor 18,272 2,654 (14.5%) 2,239 (12.3%) 12,508 (68.5%) 573 (3.1%) 145 (0.8%) 122 (0.7%) 19 (0%) 12 (0%) 0 (0%)