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Table 2 Candidate genes for validation

From: Gene expression profiling of brains from bovine spongiform encephalopathy (BSE)-infected cynomolgus macaques

Gene

Accession number

Known relation with PrP/nervous system

References

AKR1C1

NM_001195574.1

Putative role in myelin formation

[43]

HBB

NM_001164428.1

Putative role in intraneuronal oxygen homeostasis, reduced in Alzheimer's and Parkinson's disease

[44]

NCAM1

XM_001083697.2

PrP/N-CAM complexes found in prion infected N2a cells

[45]

NR4A2

NM_001266910.2

Mutations related to dopaminergic dysfunction, including Parkinson schizophrenia and depression

[46, 47]

USP16

NM_001260999.2

Depletion of USP16 prevented ATMi from restoring transcription after DSB induction

[48]

CALB1

XM_001085269.2

Plays a protective role in neurodegenerative disorders (depleted in HD)

[49]

DACH1

XM_001082371.2

Required for normal brain development

[50]

LXN

NM_001266988.1

Marker for the regional specification of the neocortex

[51]

PIK3R3

NM_001266826.1

Linked to β-amyloid plaque formation in AD brain

[52]

SAP18

NM_001261034.1

Possibly related to AD

[53]

SERPINA3

NM_001195350.1

Increased in schizophrenia, SNPs affecting onset and duration of AD

[54, 55]

TNFSF10

NM_001266034.1

Implicated in pathogenesis of MS (causing demyelination)

[56]

HBA2

NM_001044724.1

Putative role in intraneuronal oxygen homeostasis, reduced in Alzheimer's and Parkinson's diseases

[44]

GNRH1

NM_001195436.1

Key regulator of the reproductive neuroendocrine system in vertebrates

[57]

IRF3

NM_001135797

Putative protective role against prion infection

[58]

APOC1 *

AK240617.1

Binds to ApoE, risk factor for Alzheimer's disease

[59]

TM7SF3

XM_001099269.2

-

-

MYBPC1

XM_001091952.1

-

-

TTR

NM_001261679

Amyloid neuropathies, interaction with Aβ

[60]

  1. List of 19 identified genes selected on the basis of fold change value and known relevance for neurodegeneration. Because of very low signal (LXN, PIK3R3, TNFSF10, GNRH1) or lack of reliable sequence data (CALB1, DACH1, TM7SF3, MYBPC1), only 11 genes (in bold) were successfully analyzed. *Macaca fascicularis transcript.