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Table 3 Collinearity relationship of pear LOX genes to the other four species

From: Characterization of the lipoxygenase (LOX) gene family in the Chinese white pear (Pyrus bretschneideri) and comparison with other members of the Rosaceae

Synteny sequence1

Chromosome

Synteny sequence2

Chromosome

Pbr004967.1

Chr2

Pm016360

Chr5

Pbr004967.1

Chr2

ppa001316m

Chr2

Pbr004967.1

Chr2

mrna26944.1

Chr7

Pbr020414.1

Chr4

Pm003327

Chr1

Pbr020414.1

Chr4

ppa001216m

Chr6

Pbr020414.1

Chr4

MDP0000172092

Chr12

Pbr020414.1

Chr4

MDP0000264666

Chr4

Pbr020415.1

Chr4

Pm003329

Chr1

Pbr020415.1

Chr4

ppa001311m

Chr6

Pbr020415.1

Chr4

MDP0000146677

Chr12

Pbr020415.1

Chr4

MDP0000923670

Chr4

Pbr020415.1

Chr4

mrna22518.1

Chr6

Pbr020432.1

Chr4

Pm003329

Chr1

Pbr020432.1

Chr4

ppa001311m

Chr6

Pbr020433.1

Chr4

MDP0000146677

Chr12

Pbr020433.1

Chr4

mrna22518.1

Chr6

Pbr020434.1

Chr4

MDP0000312397

Chr4

Pbr020435.1

Chr4

Pm003327

Chr1

Pbr020435.1

Chr4

ppa001216m

Chr6

Pbr020435.1

Chr4

MDP0000172092

Chr12

Pbr020435.1

Chr4

MDP0000264666

Chr4

Pbr000364.1

Chr5

ppa001082m

Chr4

Pbr000364.1

Chr5

MDP0000224150

Chr5

Pbr000364.1

Chr5

MDP0000272843

Chr10

Pbr000364.1

Chr5

mrna02388.1

Chr3

Pbr035580.1

Chr5

Pm020763

Chr6

Pbr035580.1

Chr5

ppa026489m

Chr8

Pbr035580.1

Chr5

MDP0000135993

Chr6

Pbr035580.1

Chr5

mrna17386.1

Chr2

Pbr023784.2

Chr7

Pm016360

Chr5

Pbr023784.2

Chr7

ppa001316m

Chr2

Pbr023784.2

Chr7

MDP0000174168

Chr7

Pbr023784.2

Chr7

MDP0000281525

Chr2

Pbr023784.2

Chr7

mrna26944.1

Chr7

Pbr006466.3

Chr9

MDP0000450991

Chr9

Pbr016256.1

Chr10

ppa001082m

Chr4

Pbr016256.1

Chr10

MDP0000224150

Chr5

Pbr016256.1

Chr10

MDP0000272843

Chr10

Pbr004541.1

Chr11

Pm028166

scaffold103

Pbr004541.1

Chr11

ppa000968m

Chr6

Pbr004541.1

Chr11

MDP0000277666

Chr11

Pbr004541.1

Chr11

mrna20644.1

Chr3

Pbr004568.1

Chr11

Pm028166

scaffold103

Pbr004568.1

Chr11

ppa000968m

Chr6

Pbr004568.1

Chr11

MDP0000277666

Chr11

Pbr004568.1

Chr11

mrna20644.1

Chr3

Pbr008100.1

Chr16

Pm009524

Chr2

Pbr008100.1

Chr16

ppa001207m

Chr1

Pbr008100.1

Chr16

MDP0000204470

Chr16

Pbr008100.1

Chr16

MDP0000257474

Chr13

Pbr008100.1

Chr16

mrna05824.1

Chr4

Pbr036276.1

Chr16

Pm006912

Chr2

Pbr036276.1

Chr16

ppa001064m

Chr1

Pbr036276.1

Chr16

MDP0000154668

Chr13

Pbr004005.1

scaffold1189.0

Pm020763

Chr6

Pbr004005.1

scaffold1189.0

MDP0000135993

Chr6

Pbr037071.1

scaffold748.0

Pm009524

Chr2

Pbr037071.1

scaffold748.0

ppa001207m

Chr1

  1. We found 72 paired collinear relationships from these 107 sequences, of which 58 pairs are collinear between pear and other species. All the collinearity relationships are due to WGD or segmental duplication according to the result of MCscan. Pbr004541.1, Pbr004568.1 and Pbr020415.1: these three genes in pear have a collinear relationship with LOX genes in all the other four species.