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Table 4 The collinearity relationship among LOX genes in the same species

From: Characterization of the lipoxygenase (LOX) gene family in the Chinese white pear (Pyrus bretschneideri) and comparison with other members of the Rosaceae

Synteny sequence1

Chromosome

Synteny sequence2

Chromosome

mrna20644.1

Chr3

mrna26944.1

Chr7

Pbr020413.1

Chr4

Pbr020434.1

Chr4

Pbr020415.1

Chr4

Pbr020432.1

Chr4

Pbr000364.1

Chr5

Pbr016256.1

Chr10

MDP0000279287

Chr7

MDP0000281525

Chr2

MDP0000272843

Chr10

MDP0000569022

Chr5

Pbr004541.1

Chr11

Pbr004568.1

Chr11

MDP0000081005

Chr12

MDP0000423544

Chr4

MDP0000125303

Chr12

MDP0000264666

Chr4

MDP0000146677

Chr12

MDP0000923670

Chr4

MDP0000154668

Chr13

MDP0000215405

Chr16

Pbr008100.1

Chr16

Pbr037071.1

scaffold748.0

Pbr004005.1

scaffold1189.0

Pbr004008.1

scaffold1189.0

Pbr004005.1

scaffold1189.0

Pbr035580.1

Chr5

  1. In total 14 pairs of collinear relationships were detected among the same species. 7 pairs are among pear, 6 pairs are among apple and 1 in strawberry. Pbr004005.1 on scaffold1189.0 is collinear with Pbr004008.1 and Pbr035580.1. All the 4 pairs of LOX paralogous genes in pear are included in the collinearity analysis.