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Table 1 List of species used to define orthologs in each phylogenetic category

From: Plus ça change – evolutionary sequence divergence predicts protein subcellular localization signals

S. cerevisiae

H. sapiens

A. thaliana

Saccharomyces castellii

Gorilla gorilla

Glycine max

Saccharomyces kluyveri

Otolemur garnettii

Ricinus communis

Kluyveromyces waltii

Mus musculus

Populus trichocarpa

Ashbya gossypii

Oryctolagus cuniculus

Vitis vinifera

Candida glabrata

Sus scrofa

Sorghum bicolor

Kluyveromyces lactis

Ailuropoda melanoleuca

Brachypodium distachyon

Zygosaccharomyces rouxii

Myotis lucifugus

Oryza sativa

Kluyveromyces thermotolerans

Loxodonta africana

Selaginella moellendorffii

Saccharomyces bayanus

Sarcophilus harrisii

Physcomitrella patens

Kluyveromyces polysporus

Ornithorhynchus anatinus

Chlamydomonas reinhardtii

  1. The species listed at top are the reference species used to determine the subcellular localization site class labels. In the case of plants, one of G. max, O. sativa and C. reinhardtii were used as the reference species for proteins for which no annotation was available in A. thaliana.