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Table 10 Performance for 3-way classification using SVM classifier on automatically collected orthologs

From: Plus ça change – evolutionary sequence divergence predicts protein subcellular localization signals

  F Div Yeast (73) F Div Human (81)
  AUC MCC AUC MCC
MTS 0.65±0.09 0.31±0.18 0.66±0.05 0.31±0.11
SP 0.60±0.07 0.19±0.14 0.70±0.08 0.40±0.15
N-signal-free 0.66±0.08 0.35±0.15 0.69±0.06 0.39±0.11
% accuracy 51.63±7.21 57.61±4.71
  1. The 5-fold cross-validation performance of an SVM classifier using divergence features is shown for three-way classification on the automatically generated ortholog dataset for yeasts and mammals. The number of examples is given in parenthesis at top.