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Table 2 Number of repeated sequences in the P. cinnabarinus genome

From: The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

  Number of families Number of copies Genome assembly coverage
Class-1 LTR Gypsy-like 16 (13* + 3**) 642 2.5
Class-1 LTR Copia-like 11 (9* + 2**) 306 0.95
Class-1 DIRS 5 62 0.2
Class-1 LINE 5 163 0.7
Class-2 DNA Transposons 8 251 0.95
Uncategorized 150 2831 2.91
All 168 4255 8.21
  1. *Number of elements identified by RepeatScout pipeline.
  2. **Number of elements identified by LTR_STRUC pipeline.