Skip to main content

Table 2 Number of repeated sequences in the P. cinnabarinus genome

From: The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

 

Number of families

Number of copies

Genome assembly coverage

Class-1 LTR Gypsy-like

16 (13* + 3**)

642

2.5

Class-1 LTR Copia-like

11 (9* + 2**)

306

0.95

Class-1 DIRS

5

62

0.2

Class-1 LINE

5

163

0.7

Class-2 DNA Transposons

8

251

0.95

Uncategorized

150

2831

2.91

All

168

4255

8.21

  1. *Number of elements identified by RepeatScout pipeline.
  2. **Number of elements identified by LTR_STRUC pipeline.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us