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Table 2 T4S effectors predicted from H. pylori

From: Prediction of bacterial type IV secreted effectors by C-terminal features

Protein_Accession

Annotation

Joint

bpbAac

psAac

gi|15644760|ref|NP_206930.1|

Hypothetical protein HP0130

√

√

√

gi|15645482|ref|NP_207657.1|

Hypothetical protein HP0863

√

√

√

gi|15645135|ref|NP_207305.1|

Hypothetical protein HP0508

√

√

√

gi|15644973|ref|NP_207143.1|

Hypothetical protein HP0345

√

√

 

gi|15645339|ref|NP_207511.1|

DNA polymerase III subunits gamma and tau

√

√

√

gi|15645728|ref|NP_207905.1|

Excinuclease ABC subunit B

√

√

 

gi|15646132|ref|NP_208314.1|

Hypothetical protein HP1524

√

√

 

gi|15645173|ref|NP_207343.1|

Cag pathogenicity island protein (cag26, cagA )

√

√

√

gi|15644995|ref|NP_207165.1|

Hypothetical protein HP0367

√

√

 

gi|15645343|ref|NP_207515.1|

Hypothetical protein HP0721

√

√

 

gi|15645618|ref|NP_207794.1|

Hypothetical protein HP1003

√

√

√

gi|15645567|ref|NP_207743.1|

Putative recombination protein RecO

√

 

√

gi|15645998|ref|NP_208179.1|

Hypothetical protein HP1388

√

√

 

gi|15644810|ref|NP_206980.1|

Hypothetical protein HP0181

√

√

 

gi|15644793|ref|NP_206963.1|

Signal-transducing protein, histidine kinase

√

√

√

gi|15645647|ref|NP_207823.1|

Hypothetical protein HP1033

√

√

 

gi|15644672|ref|NP_206842.1|

Hypothetical protein HP0041

√

√

√

gi|15644966|ref|NP_207136.1|

Hypothetical protein HP0338

√

√

√

gi|15646203|ref|NP_208145.1|

Hypothetical protein HP1353

√

√

 

gi|15645609|ref|NP_207785.1|

Hypothetical protein HP0994

√

√

√

gi|15644860|ref|NP_207030.1|

Hypothetical protein HP0232

√

√

√

gi|15645621|ref|NP_207797.1|

Conjugal transfer protein (traG)

√

√

 

gi|15645351|ref|NP_207525.1|

Hypothetical protein HP0731

√

√

 

gi|15645518|ref|NP_207693.1|

Hydrogenase expression/formation protein (hypB)

√

√

√

gi|15645888|ref|NP_208066.1|

Paralysed flagella protein (pflA)

√

√

 
  1. Note: ‘Joint’, ‘bpbAac’ and ‘psAac’ represent ‘T4SEpre_Joint’, ‘T4SEpre_bpbAac’ and ‘T4SEpre_psAac’ model, respectively. The genes with one or more of the three motifs identified in this study were in italic.