Genomewide comparison and novel ncRNAs of Aquificales

BMC Genomics

Table 1 Protein annotations

	NCBI	BacProt	Equal	Start shifted	End shifted	NCBI only	BacProt only	Extended
AAE	1560	1255	954	116	124	366	61	1621
	897	685	475	51	54	317	105	1002
DTH	1513	1383	1092	86	105	230	100	1613
	1115	744	561	58	74	422	51	1166
HBA	1629	1340	1040	119	126	344	55	1684
	1063	672	500	62	68	433	42	1105
HTH	1893	1361	1069	111	129	584	52	1945
	1343	749	594	62	84	603	9	1352
PMA	2051	1593	1286	129	122	514	56	2107
	1494	806	629	84	76	705	17	1511
SAZ	1723	1427	1190	90	99	344	48	1771
	1321	741	601	50	73	597	17	1338
SSP	1722	1532	1225	76	108	313	123	1845
	1145	752	573	38	70	464	71	1216
TAL	1593	1145	903	93	127	470	22	1615
	1144	691	514	59	85	486	33	1177
TAM	1814	1243	1014	90	99	611	40	1854
	1176	748	575	60	63	478	50	1226
HVI	3808	2327	1537	302	306	1663	182	3990
	1960	933	595	102	92	1171	144	2104

Annotations obtained with NCBI (first column, bold font) and those identified with BacProt (second column) lead to an extended current annotation of Aquificales (last column, bold font). In the second lines, hypothetical proteins were removed. Equal – proteins equally identified by BacProt and NCBI; Start/End shifted – proteins identified by BacProt and NCBI vary in length (only 5’ or 3’); NCBI/BacProt only – proteins identified only by NCBI/BacProt. All gff files are available in the Supplemental Material. Species abbreviations as in Figure 1.

ISSN: 1471-2164