Table 1 Significant QTL regions per chromosome (SSC) associated with number of teats including the most significant SNPs, minor allele frequency (MAF), Bayes Factor (BF), allele substitution effect, the genetic variance explained by the region and the number of genes (Ensembl Gene IDs) found within the region

1

2

32.99-34.51

ALGA0012906

0.27

66.7

−0.143

0.17

1

2

2

140.44-140.93

ISU10000081

0.28

22.7

−0.17

0.11

12

3

3

39.13-39.28

MARC0000538

0.35

15.4

−0.079

0.04

1

4

3

44.55-45.82

ASGA0014296

0.29

16.4

−0.067

0.06

22

5

3

113.1-113.41

ALGA0020641

0.3

16.4

−0.068

0.08

1

6

3

134.97-135.69

ASGA0090006

0.23

35.5

−0.051

0.23

12

7

3

138.21-138.59

ALGA0115665

0.18

17.5

−0.117

0.07

0

8

4

139.72-140.10

H3GA0014860

0.39

15.4

−0.002

0.04

3

9

7

55.41-58.19

H3GA0021793

0.35

31.2

0.187

0.57

28

10

7

63.59-63.78

DRGA0007689

0.46

17.5

0.151

0.05

4

11

7

73.7-74.94

DRGA0007771

0.32

10.2

−0.155

0.04

1

12

7

87.05-91.15

ALGA0042950

0.35

28

0.157

0.29

7

13

7

102.01-105.22

ALGA0122954

0.21

210.1

0.227

2.51

56

14

8

33.26-35.00

ASGA0093882

0.34

44.3

0.16

0.38

11

15

8

43.92-45.19

ALGA0119079

0.23

22.7

−0.205

0.06

12

16

8

55.18-58.63

ALGA0047889

0.18

23.8

−0.198

0.24

26

17

8

80.00-81.42

MARC0044036

0.18

25.9

0.246

0.12

8

18

8

130.69-130.91

ALGA0049466

0.46

37.7

0.054

0.2

1

19

8

143.24-143.35

ALGA0050050

0.36

17.5

−0.073

0.05

1

20

9

36.15-38.36

UMB10000133

0.18

97.5

−0.158

0.24

20

21

9

75.48-76.83

ALGA0053672

0.39

20.6

−0.171

0.16

2

22

9

85.48-85.84

H3GA0027836

0.29

16.4

−0.17

0.07

2

23

10

52.21-53.94

DRGA0010548

0.09

122.3

0.39

0.29

10

24

10

56.37-56.78

ASGA0103067

0.48

35.5

0.101

0.09

2

25

11

25.34-26.23

ALGA0061540

0.3

19.5

0.171

0.05

7

26

12

42.93-44.76

ALGA0123748

0.25

18.5

−0.141

0.14

18

27

12

48.73-49.13

ASGA0082658

0.24

16.4

0.234

0.06

4

28

12

51.95-52.62

ALGA0066876

0.47

156.4

0.094

1.1

14

29

12

54.70-56.06

H3GA0034702

0.19

78.4

0.212

0.29

90

30

14

80.44-84.34

ALGA0079106

0.48

140.4

0.143

0.56

47

31

15

3.02-3.24

H3GA0043638

0.07

17.5

0.309

0.03

1

32

15

8.04-8.91

ASGA0068444

0.26

30.1

0.195

0.06

3

33

15

26.16-26.82

CASI0009989

0.17

16.4

0.235

0.05

1

34

15

147.34-147.74

ASGA0071500

0.25

17.5

0.246

0.04

8

35

15

153.82-154.57

M1GA0027067

0.4

53.1

−0.027

0.35

23

36

16

1.02-1.03

H3GA0045756

0.44

12.3

−0.034

0.04

0

37

16

27.60-30.67

DRGA0016028

0.34

30.1

0.035

0.43

24

38

18

21.22-21.27

H3GA0050517

0.47

13.3

−0.228

0.05

0

39

18

50.12-51.64

ASGA0080142

0.21

15.4

0.237

0.06

6