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Table 1 Summary statistics for sequence volume, mapping and coverage

From: Design and development of exome capture sequencing for the domestic pig (Sus scrofa)

Stat Read pairs Gbp % mapped % total on target % mapped on target % duplicates 1X 10X 30X 40X
Min 22141118 4.43 83.41 51.27 59.45 1.13 94.96 81.42 48.26 33.21
Max 56000083 11.20 93.96 68.64 73.28 9.48 98.07 94.29 86.99 82.49
Mean 38415939 7.68 89.62 60.74 67.75 3.78 97.13 91.11 75.02 64.33
  1. Summary statistics from the exome sequencing of 96 pigs, showing minimum, maximum and mean values for a variety of sequence, mapping and coverage statistics. The columns in order represent: the statistic calculated; number of read pairs; gigabases sequenced; percentage of reads mapped; percentage of total reads overlapping with the target region; percentage of the mapped reads overlapping with the target; estimate of percent PCR duplicates; percent of bases in target covered at 1X; percent of bases in target covered at 10X; percent of bases in target covered at 30X; percent of bases in target covered at 40X.