Design and development of exome capture sequencing for the domestic pig (Sus scrofa)

BMC Genomics

Table 1 Summary statistics for sequence volume, mapping and coverage

Stat	Read pairs	Gbp	% mapped	% total on target	% mapped on target	% duplicates	1X	10X	30X	40X
Min	22141118	4.43	83.41	51.27	59.45	1.13	94.96	81.42	48.26	33.21
Max	56000083	11.20	93.96	68.64	73.28	9.48	98.07	94.29	86.99	82.49
Mean	38415939	7.68	89.62	60.74	67.75	3.78	97.13	91.11	75.02	64.33

Summary statistics from the exome sequencing of 96 pigs, showing minimum, maximum and mean values for a variety of sequence, mapping and coverage statistics. The columns in order represent: the statistic calculated; number of read pairs; gigabases sequenced; percentage of reads mapped; percentage of total reads overlapping with the target region; percentage of the mapped reads overlapping with the target; estimate of percent PCR duplicates; percent of bases in target covered at 1X; percent of bases in target covered at 10X; percent of bases in target covered at 30X; percent of bases in target covered at 40X.

ISSN: 1471-2164