Table 1 Mapping of Picea balfouriana RNA-seq library reads to the Picea abies reference genome database
From: Transcriptome analysis of callus from Picea balfouriana
Classification | ET Genotype1 | NET Genotype 1 | ET Genotype 2 | NET Genotype 2 | ET Genotype 3 | NET Genotype 3 |
|---|---|---|---|---|---|---|
Raw reads | 12,519,224 | 11,703,983 | 12,150,702 | 11,734,531 | 12,150,562 | 12,280,320 |
Base pairs | 613,419,76 | 573,495,167 | 595,384,398 | 574,992,019 | 595,377,538 | 601,735,680 |
% | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
Mapped reads | 5,713,055 | 5,044,017 | 5,590,502 | 4,359,900 | 5,519,889 | 5,456,021 |
% | 45.63 | 43.10 | 46.01 | 37.15 | 45.43 | 44.43 |
Perfect match | 3,923,702 | 3,401,759 | 3,865,351 | 2,947,585 | 3,870,249 | 3,674,461 |
% | 31.34 | 29.06 | 31.81 | 25.12 | 31.85 | 29.92 |
<=2Â bp mismatch | 1,789,353 | 1,642,258 | 1,725,151 | 1,412,315 | 1,649,640 | 1,781,560 |
% | 14.29 | 14.03 | 14.20 | 12.04 | 13.58 | 14.51 |
Unique match | 5,374,869 | 47,721,812 | 5,262,180 | 4,081,332 | 5,214,938 | 5,117,424 |
% | 42.93 | 40.34 | 43.31 | 34.78 | 42.92 | 41.67 |
Multi-position match | 338,186 | 322,205 | 328,322 | 278,568 | 304,951 | 338,597 |
% | 2.70 | 2.75 | 2.70 | 12.42 | 2.51 | 2.76 |
Unmapped reads | 6,806,169 | 6,659,966 | 6,560,200 | 7,374,631 | 6,630,673 | 6,824,299 |
% | 54.37 | 56.90 | 53.99 | 62.85 | 54.57 | 55.57 |