Table 4 KEGG pathways of differentially expressed genes
From: Transcriptome analysis gene expression in the liver of Coilia nasus during the stress response
Category | Pathway | Pathway ID | Gene number | Q-value |
|---|---|---|---|---|
Carbohydrate metabolism | Glycolysis/Gluconeogenesis | ko00010 | 38 | 2.09E-03 |
Starch and sucrose metabolism | ko00500 | 32 | 2.67E-03 | |
Pyruvate metabolism | ko00620 | 32 | 2.89E-03 | |
Type I diabetes mellitus | ko04940 | 31 | 1.39E-08 | |
Glyoxylate and dicarboxylate metabolism | ko00630 | 24 | 1.34E-04 | |
Butanoate metabolism | ko00650 | 17 | 4.16E-03 | |
D-Glutamine and D-glutamate metabolism | ko00471 | 5 | 2.12E-02 | |
Lipid metabolism | Glycerophospholipid metabolism | ko00564 | 36 | 4.43E-02 |
Fat digestion and absorption | ko04975 | 28 | 3.61E-03 | |
Steroid hormone biosynthesis | ko00140 | 24 | 3.40E-02 | |
Steroid biosynthesis | ko00100 | 23 | 1.22E-12 | |
Fatty acid biosynthesis | ko00061 | 12 | 9.34E-04 | |
Ether lipid metabolism | ko00565 | 16 | 3.56E-02 | |
Other metabolism | Protein processing in endoplasmic reticulum | ko04141 | 92 | 3.53E-03 |
Protein digestion and absorption | ko04974 | 60 | 1.53E-04 | |
Metabolic pathways | ko01100 | 448 | 2.46E-09 | |
Glutathione metabolism | ko00480 | 26 | 2.67E-03 | |
Caffeine metabolism | ko00232 | 8 | 3.56E-03 | |
PPAR signaling pathway | ko03320 | 64 | 2.52E-06 | |
Arachidonic acid metabolism | ko00590 | 38 | 6.51E-04 | |
Vitamin digestion and absorption | ko04977 | 24 | 1.34E-03 | |
Propanoate metabolism | ko00640 | 21 | 1.24E-02 | |
Terpenoid backbone biosynthesis | ko00900 | 16 | 5.07E-06 | |
alpha-Linolenic acid metabolism | ko00592 | 14 | 7.18E-03 | |
Valine, leucine and isoleucine biosynthesis | ko00290 | 8 | 2.67E-03 | |
Immunity | Phagosome | ko04145 | 114 | 1.09E-08 |
HTLV-I infection | ko05166 | 107 | 2.67E-02 | |
Amoebiasis | ko05146 | 104 | 2.07E-02 | |
Epstein-Barr virus infection | ko05169 | 100 | 2.42E-02 | |
Herpes simplex infection | ko05168 | 100 | 3.40E-02 | |
Tuberculosis | ko05152 | 89 | 7.47E-03 | |
Viral myocarditis | ko05416 | 73 | 2.46E-03 | |
Antigen processing and presentation | ko04612 | 72 | 1.17E-13 | |
Systemic lupus erythematosus | ko05322 | 68 | 2.59E-09 | |
Pertussis | ko05133 | 63 | 1.38E-02 | |
Complement and coagulation cascades | ko04610 | 60 | 3.61E-03 | |
Natural killer cell mediated cytotoxicity | ko04650 | 59 | 1.50E-03 | |
Staphylococcus aureus infection | ko05150 | 54 | 4.71E-04 | |
Rheumatoid arthritis | ko05323 | 51 | 8.59E-06 | |
Legionellosis | ko05134 | 49 | 2.67E-03 | |
Leishmaniasis | ko05140 | 48 | 2.84E-04 | |
Chagas disease (American trypanosomiasis) | ko05142 | 48 | 4.65E-02 | |
Autoimmune thyroid disease | ko05320 | 41 | 3.43E-11 | |
Allograft rejection | ko05330 | 40 | 3.43E-11 | |
Prion diseases | ko05020 | 40 | 2.67E-02 | |
Graft-versus-host disease | ko05332 | 27 | 5.09E-07 | |
Primary immunodeficiency | ko05340 | 27 | 3.53E-03 | |
Intestinal immune network for IgA production | ko04672 | 24 | 2.32E-04 | |
African trypanosomiasis | ko05143 | 23 | 1.34E-03 | |
Asthma | ko05310 | 22 | 8.22E-05 | |
Others | Spliceosome | ko03040 | 113 | 3.29E-02 |
Insulin signaling pathway | ko04910 | 91 | 1.34E-04 | |
Alzheimer’s disease | ko05010 | 65 | 3.57E-02 | |
Pancreatic secretion | ko04972 | 56 | 1.05E-05 | |
Ribosome | ko03010 | 55 | 1.72E-06 | |
Calcium signaling pathway | ko04020 | 55 | 1.38E-02 | |
Adipocytokine signaling pathway | ko04920 | 45 | 1.09E-02 | |
Gastric acid secretion | ko04971 | 42 | 1.18E-03 | |
Circadian rhythm - mammal | ko04710 | 31 | 1.28E-06 | |
DNA replication | ko03030 | 27 | 5.09E-07 | |
Olfactory transduction | ko04740 | 23 | 2.95E-02 | |
Phototransduction - fly | ko04745 | 19 | 3.40E-02 | |
Proximal tubule bicarbonate reclamation | ko04964 | 18 | 3.48E-03 | |
Mismatch repair | ko03430 | 16 | 8.76E-04 | |
Circadian rhythm - fly | ko04711 | 15 | 4.32E-03 | |
Protein export | ko03060 | 10 | 3.21E-02 |