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Table 4 KEGG pathways of differentially expressed genes

From: Transcriptome analysis gene expression in the liver of Coilia nasus during the stress response

Category Pathway Pathway ID Gene number Q-value
Carbohydrate metabolism Glycolysis/Gluconeogenesis ko00010 38 2.09E-03
  Starch and sucrose metabolism ko00500 32 2.67E-03
  Pyruvate metabolism ko00620 32 2.89E-03
  Type I diabetes mellitus ko04940 31 1.39E-08
  Glyoxylate and dicarboxylate metabolism ko00630 24 1.34E-04
  Butanoate metabolism ko00650 17 4.16E-03
  D-Glutamine and D-glutamate metabolism ko00471 5 2.12E-02
Lipid metabolism Glycerophospholipid metabolism ko00564 36 4.43E-02
  Fat digestion and absorption ko04975 28 3.61E-03
  Steroid hormone biosynthesis ko00140 24 3.40E-02
  Steroid biosynthesis ko00100 23 1.22E-12
  Fatty acid biosynthesis ko00061 12 9.34E-04
  Ether lipid metabolism ko00565 16 3.56E-02
Other metabolism Protein processing in endoplasmic reticulum ko04141 92 3.53E-03
  Protein digestion and absorption ko04974 60 1.53E-04
  Metabolic pathways ko01100 448 2.46E-09
  Glutathione metabolism ko00480 26 2.67E-03
  Caffeine metabolism ko00232 8 3.56E-03
  PPAR signaling pathway ko03320 64 2.52E-06
  Arachidonic acid metabolism ko00590 38 6.51E-04
  Vitamin digestion and absorption ko04977 24 1.34E-03
  Propanoate metabolism ko00640 21 1.24E-02
  Terpenoid backbone biosynthesis ko00900 16 5.07E-06
  alpha-Linolenic acid metabolism ko00592 14 7.18E-03
  Valine, leucine and isoleucine biosynthesis ko00290 8 2.67E-03
Immunity Phagosome ko04145 114 1.09E-08
  HTLV-I infection ko05166 107 2.67E-02
  Amoebiasis ko05146 104 2.07E-02
  Epstein-Barr virus infection ko05169 100 2.42E-02
  Herpes simplex infection ko05168 100 3.40E-02
  Tuberculosis ko05152 89 7.47E-03
  Viral myocarditis ko05416 73 2.46E-03
  Antigen processing and presentation ko04612 72 1.17E-13
  Systemic lupus erythematosus ko05322 68 2.59E-09
  Pertussis ko05133 63 1.38E-02
  Complement and coagulation cascades ko04610 60 3.61E-03
  Natural killer cell mediated cytotoxicity ko04650 59 1.50E-03
  Staphylococcus aureus infection ko05150 54 4.71E-04
  Rheumatoid arthritis ko05323 51 8.59E-06
  Legionellosis ko05134 49 2.67E-03
  Leishmaniasis ko05140 48 2.84E-04
  Chagas disease (American trypanosomiasis) ko05142 48 4.65E-02
  Autoimmune thyroid disease ko05320 41 3.43E-11
  Allograft rejection ko05330 40 3.43E-11
  Prion diseases ko05020 40 2.67E-02
  Graft-versus-host disease ko05332 27 5.09E-07
  Primary immunodeficiency ko05340 27 3.53E-03
  Intestinal immune network for IgA production ko04672 24 2.32E-04
  African trypanosomiasis ko05143 23 1.34E-03
  Asthma ko05310 22 8.22E-05
Others Spliceosome ko03040 113 3.29E-02
  Insulin signaling pathway ko04910 91 1.34E-04
  Alzheimer’s disease ko05010 65 3.57E-02
  Pancreatic secretion ko04972 56 1.05E-05
  Ribosome ko03010 55 1.72E-06
  Calcium signaling pathway ko04020 55 1.38E-02
  Adipocytokine signaling pathway ko04920 45 1.09E-02
  Gastric acid secretion ko04971 42 1.18E-03
  Circadian rhythm - mammal ko04710 31 1.28E-06
  DNA replication ko03030 27 5.09E-07
  Olfactory transduction ko04740 23 2.95E-02
  Phototransduction - fly ko04745 19 3.40E-02
  Proximal tubule bicarbonate reclamation ko04964 18 3.48E-03
  Mismatch repair ko03430 16 8.76E-04
  Circadian rhythm - fly ko04711 15 4.32E-03
  Protein export ko03060 10 3.21E-02