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Table 6 dN/dS ratios for various OR protein domains

From: Inventory of the cichlid olfactory receptor gene repertoires: identification of olfactory genes with more than one coding exon

Family D

Entire molecule

    

32 genes

0.44±0.10

TM1

0.28±0.18

IN1

0.36±0.33

  

TM2

0.24±0.23

IN2

0.69±0.72

  

TM3

0.64±0.46

IN3

0.26±0.26

  

TM4

0.83±1.01

OUT1

0.22±0.22

  

TM5

0.58±0.39

OUT2

1.14±1.06

  

TM6

0.42±0.41

OUT3

0.80±0.56

  

TM7

0.36±0.35

  

Family E

Entire molecule

    

56 genes

0.40±0.11

TM1

0.57±0.27

IN1

0.24±0.01

  

TM2

0.52±0.48

IN2

0.42±0.37

  

TM3

0.73±0.79

IN3

0.32±0.37

  

TM4

0.69±0.39

OUT1

0.43±0.24

  

TM5

0.70±0.44

OUT2

0.30±0.23

  

TM6

0.23±0.21

OUT3

0.41±0.38

  

TM7

0.21±0.12

  

Family H

Entire molecule

    

50 genes

0.41±0.13

TM1

0.56±0.47

IN1

0.35±0.24

  

TM2

0.24±0.22

IN2

0.23±0.15

  

TM3

0.48±0.43

IN3

0.34±0.24

  

TM4

0.53±0.39

OUT1

0.39±0.51

  

TM5

0.76±0.68

OUT2

0.64±0.36

  

TM6

0.84±0.51

OUT3

0.67±0.72

  

TM7

0.27±0.29

  

Family L

Entire molecule

    

32 genes

0.50±0.12

TM1

0.56±0.42

IN1

0.23±0.11

  

TM2

0.59±0.58

IN2

0.41±0.38

  

TM3

0.76±0.43

IN3

0.59±0.33

  

TM4

1.48±1.54

OUT1

0.29±0.34

  

TM5

0.63±0.36

OUT2

0.35±0.22

  

TM6

0.72±0.42

OUT3

0.40±0.34

  

TM7

0.56±0.58

  

Family N

Entire molecule

    

32 genes

0.39±0.14

TM1

0.45±0.35

IN1

0.57±0.35

  

TM2

0.79±0.37

IN2

0.60±0.55

  

TM3

0.68±0.57

IN3

0.41±0.33

  

TM4

0.95±0.54

OUT1

0.35±0.27

  

TM5

0.56±0.41

OUT2

0.24±0.11

  

TM6

0.60±0.41

OUT3

0.40±0.13

  

TM7

1.20±1.07

  
  1. dN/dS ratios for the 7 TM regions, and the 3 external and 3 internal loops for the 4 largest families were calculated. TM regions and loops were identified with PolyPhobius.
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BMC Genomics

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