Skip to main content

Table 6 dN/dS ratios for various OR protein domains

From: Inventory of the cichlid olfactory receptor gene repertoires: identification of olfactory genes with more than one coding exon

Family D Entire molecule     
32 genes 0.44±0.10 TM1 0.28±0.18 IN1 0.36±0.33
   TM2 0.24±0.23 IN2 0.69±0.72
   TM3 0.64±0.46 IN3 0.26±0.26
   TM4 0.83±1.01 OUT1 0.22±0.22
   TM5 0.58±0.39 OUT2 1.14±1.06
   TM6 0.42±0.41 OUT3 0.80±0.56
   TM7 0.36±0.35   
Family E Entire molecule     
56 genes 0.40±0.11 TM1 0.57±0.27 IN1 0.24±0.01
   TM2 0.52±0.48 IN2 0.42±0.37
   TM3 0.73±0.79 IN3 0.32±0.37
   TM4 0.69±0.39 OUT1 0.43±0.24
   TM5 0.70±0.44 OUT2 0.30±0.23
   TM6 0.23±0.21 OUT3 0.41±0.38
   TM7 0.21±0.12   
Family H Entire molecule     
50 genes 0.41±0.13 TM1 0.56±0.47 IN1 0.35±0.24
   TM2 0.24±0.22 IN2 0.23±0.15
   TM3 0.48±0.43 IN3 0.34±0.24
   TM4 0.53±0.39 OUT1 0.39±0.51
   TM5 0.76±0.68 OUT2 0.64±0.36
   TM6 0.84±0.51 OUT3 0.67±0.72
   TM7 0.27±0.29   
Family L Entire molecule     
32 genes 0.50±0.12 TM1 0.56±0.42 IN1 0.23±0.11
   TM2 0.59±0.58 IN2 0.41±0.38
   TM3 0.76±0.43 IN3 0.59±0.33
   TM4 1.48±1.54 OUT1 0.29±0.34
   TM5 0.63±0.36 OUT2 0.35±0.22
   TM6 0.72±0.42 OUT3 0.40±0.34
   TM7 0.56±0.58   
Family N Entire molecule     
32 genes 0.39±0.14 TM1 0.45±0.35 IN1 0.57±0.35
   TM2 0.79±0.37 IN2 0.60±0.55
   TM3 0.68±0.57 IN3 0.41±0.33
   TM4 0.95±0.54 OUT1 0.35±0.27
   TM5 0.56±0.41 OUT2 0.24±0.11
   TM6 0.60±0.41 OUT3 0.40±0.13
   TM7 1.20±1.07   
  1. dN/dS ratios for the 7 TM regions, and the 3 external and 3 internal loops for the 4 largest families were calculated. TM regions and loops were identified with PolyPhobius.