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Table 3 Transcript abundance in shikimate pathway derived phenylpropanoid biosynthetic pathway genes as per the lamiaceae annotation

From: De novo sequencing and comparative analysis of holy and sweet basil transcriptomes

Phenylpropanoid pathway genes E.C. No. Ocimum sanctum Ocimum basilicum
No. of transcripts Avg RPKM No. of transcripts Avg RPKM
Chavicol O-methyltransferase (CVOMT) 2.1.1.146 4 4.55 2 88.55
Eugenol synthase 1 (EGS) 1.1.1.318 6 15.38 8 42.27
p-Coumaroyl shikimate 3′-hydroxylase (CS3′H) 1.14.13.36 28 15.72 69 8.96
p-Coumarate 3-hydroxylase (C3H) 1.14.13.36 15 8.64 29 4.06
Cinnamate 4-hydroxylase (C4H) 1.14.13.11 7 34.53 21 11.83
4-Coumarate:coenzyme A ligase (4CL) 6.2.1.12 140 9.52 251 5.65
Alcohol acyltransferase (AAT) 2.3.1.84 18 10.05 35 6.12
Cinnamyl alcohol dehydrogenase (CAD) 1.1.1.195 57 15.78 38 24.60
Cinnamoyl-CoA reductase (CCR) 1.2.1.44 78 13.48 112 6.90
Rosmarinic acid synthase (RAS) 2.3.1.140 40 13.59 59 6.28
Phenylalanine ammonia-lyase (PAL) 4.3.1.24 9 91.47 45 11.33
Alcohol dehydrogenase (ADH) 1.1.1.1 101 11.48 226 10.82
Anthocyanidin 3-O-glucoside 5-O-glucosyltransferase (PF3R4) 2.4.1.115 54 11.37 127 3.45
Anthocyanidin synthase (ANS) 1.14.11.19 71 11.47 164 7.45
Cinnamate/p-coumarate carboxyl methyltransferase (CCMT) 2.1.1.- 20 8.12 54 11.01
Caffeoyl CoA O-methyltransferase (CCOMT) 2.1.1.104 16 16.38 36 7.26
Chalcone isomerase (CHI) 5.5.1.6 14 15.92 12 7.51
Chalcone synthase (CHS) 2.3.1.74 29 25.19 72 15.01
Caffeic acid 3-O-methyltransferase (COMT) 2.1.1.68 8 8.97 13 5.03
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAHPS) 2.5.1.54 14 48.28 25 18.98
Dihydroflavonol 4-reductase (DFR) 1.1.1.219 41 12.33 73 7.42
Flavanone 3-hydroxylase (F3H) 1.14.11.9 71 14.76 95 8.55
Flavonoid 3′-hydroxylase (F3′H) 1.14.13.21 47 9.19 72 4.12
Glutathione S-transferase (GST) 2.5.1.18 43 24.55 63 13.80
Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (HSHCT) 2.3.1.133 5 7.05 13 4.53
Hydroxycinnamoyl transferase (HCT) 2.3.1.99 17 12.94 62 3.92
4-Hydroxyphenylpyruvate dioxygenase (HPPD) 1.13.11.27 6 13.73 11 10.70
Hydroxyphenylpyruvate reductase (HPPR) 1.1.1.237 33 7.80 58 7.24
Polyphenol oxidase (PPO) 1.10.3.1 6 50.85 19 44.55
Tyrosine aminotransferase (TAT) 2.6.1.5 63 13.96 101 11.58
UDP-glucose: flavonoid 7-O-glucosyltransferase (UFGT) 2.4.1.91 17 5.33 79 12.14