Table 3 Transcript abundance in shikimate pathway derived phenylpropanoid biosynthetic pathway genes as per the lamiaceae annotation
From: De novo sequencing and comparative analysis of holy and sweet basil transcriptomes
Phenylpropanoid pathway genes | E.C. No. | Ocimum sanctum | Ocimum basilicum | ||
|---|---|---|---|---|---|
No. of transcripts | Avg RPKM | No. of transcripts | Avg RPKM | ||
Chavicol O-methyltransferase (CVOMT) | 2.1.1.146 | 4 | 4.55 | 2 | 88.55 |
Eugenol synthase 1 (EGS) | 1.1.1.318 | 6 | 15.38 | 8 | 42.27 |
p-Coumaroyl shikimate 3′-hydroxylase (CS3′H) | 1.14.13.36 | 28 | 15.72 | 69 | 8.96 |
p-Coumarate 3-hydroxylase (C3H) | 1.14.13.36 | 15 | 8.64 | 29 | 4.06 |
Cinnamate 4-hydroxylase (C4H) | 1.14.13.11 | 7 | 34.53 | 21 | 11.83 |
4-Coumarate:coenzyme A ligase (4CL) | 6.2.1.12 | 140 | 9.52 | 251 | 5.65 |
Alcohol acyltransferase (AAT) | 2.3.1.84 | 18 | 10.05 | 35 | 6.12 |
Cinnamyl alcohol dehydrogenase (CAD) | 1.1.1.195 | 57 | 15.78 | 38 | 24.60 |
Cinnamoyl-CoA reductase (CCR) | 1.2.1.44 | 78 | 13.48 | 112 | 6.90 |
Rosmarinic acid synthase (RAS) | 2.3.1.140 | 40 | 13.59 | 59 | 6.28 |
Phenylalanine ammonia-lyase (PAL) | 4.3.1.24 | 9 | 91.47 | 45 | 11.33 |
Alcohol dehydrogenase (ADH) | 1.1.1.1 | 101 | 11.48 | 226 | 10.82 |
Anthocyanidin 3-O-glucoside 5-O-glucosyltransferase (PF3R4) | 2.4.1.115 | 54 | 11.37 | 127 | 3.45 |
Anthocyanidin synthase (ANS) | 1.14.11.19 | 71 | 11.47 | 164 | 7.45 |
Cinnamate/p-coumarate carboxyl methyltransferase (CCMT) | 2.1.1.- | 20 | 8.12 | 54 | 11.01 |
Caffeoyl CoA O-methyltransferase (CCOMT) | 2.1.1.104 | 16 | 16.38 | 36 | 7.26 |
Chalcone isomerase (CHI) | 5.5.1.6 | 14 | 15.92 | 12 | 7.51 |
Chalcone synthase (CHS) | 2.3.1.74 | 29 | 25.19 | 72 | 15.01 |
Caffeic acid 3-O-methyltransferase (COMT) | 2.1.1.68 | 8 | 8.97 | 13 | 5.03 |
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAHPS) | 2.5.1.54 | 14 | 48.28 | 25 | 18.98 |
Dihydroflavonol 4-reductase (DFR) | 1.1.1.219 | 41 | 12.33 | 73 | 7.42 |
Flavanone 3-hydroxylase (F3H) | 1.14.11.9 | 71 | 14.76 | 95 | 8.55 |
Flavonoid 3′-hydroxylase (F3′H) | 1.14.13.21 | 47 | 9.19 | 72 | 4.12 |
Glutathione S-transferase (GST) | 2.5.1.18 | 43 | 24.55 | 63 | 13.80 |
Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (HSHCT) | 2.3.1.133 | 5 | 7.05 | 13 | 4.53 |
Hydroxycinnamoyl transferase (HCT) | 2.3.1.99 | 17 | 12.94 | 62 | 3.92 |
4-Hydroxyphenylpyruvate dioxygenase (HPPD) | 1.13.11.27 | 6 | 13.73 | 11 | 10.70 |
Hydroxyphenylpyruvate reductase (HPPR) | 1.1.1.237 | 33 | 7.80 | 58 | 7.24 |
Polyphenol oxidase (PPO) | 1.10.3.1 | 6 | 50.85 | 19 | 44.55 |
Tyrosine aminotransferase (TAT) | 2.6.1.5 | 63 | 13.96 | 101 | 11.58 |
UDP-glucose: flavonoid 7-O-glucosyltransferase (UFGT) | 2.4.1.91 | 17 | 5.33 | 79 | 12.14 |