Table 5 Transcript abundance of MVA pathway derived terpene biosynthetic pathway genes as per the lamiaceae annotation
From: De novo sequencing and comparative analysis of holy and sweet basil transcriptomes
MVA pathway genes | E.C. No. | Ocimum sanctum | Ocimum basilicum | ||
|---|---|---|---|---|---|
No. of transcripts | Avg RPKM | No. of transcripts | Avg RPKM | ||
Acetoacetyl-CoA thiolase (AACT) | 2.3.1.9 | 13 | 14.10 | 11 | 26.48 |
3-Hydroxy-3-methylglutaryl coenzyme A synthase (HMGS) | 2.3.3.10 | 7 | 11.90 | 14 | 2.44 |
3-Hydroxy-3-methylglutaryl-coenzyme A reductase (HMGR) | 1.1.1.34 | 14 | 7.04 | 36 | 12.17 |
Mevalonate kinase (MVK) | 2.7.1.36 | 3 | 4.27 | 2 | 6.40 |
5-Phosphomevalonate kinase (PMK) | 2.7.4.2 | 1 | 11.56 | 14 | 3.46 |
Mevalonate diphosphate decarboxylase (MDC) | 4.1.1.33 | 9 | 20.03 | 12 | 1.67 |
Farnesyl diphosphate synthase (FPPS) | 2.5.1.10 | 2 | 10.42 | 7 | 11.62 |
Squalene synthase (SQS) | 2.5.1.21 | 13 | 18.30 | 7 | 15.75 |