Table 4 Comparison between CNVRs detected in the study with those in the previous reports
From: Global copy number analyses by next generation sequencing provide insight into pig genome variation
Study | CNVR detected in the previous studies | Overlaps with this study | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Methods | Sample | CNVR | Range (kb) | Median (kb) | Mean (kb) | Total (Mb) | Count | Count percentage (%) | Total length (kb) | Length percentage (%) |
Fadista et al., 2008 [35] | aCGH (385Â k) | 12 | 37 | 1.74-61.92 | 6.89 | 9.32 | 0.43 | 3 | 0.0958 | 21.435 | 0.0208 |
Ramayo-Caldas et al., 2010 [24] | SNP chip (60Â k) | 55 | 49 | 44.65-10715.82 | 170.96 | 754.59 | 36.97 | 3 | 0.0958 | 408.541 | 0.3974 |
Wang et al., 2012 [25] | SNP chip (60Â k) | 474 | 382 | 5.03-2702.75 | 142.90 | 250.69 | 95.76 | 61 | 1.9483 | 1845.698 | 1.7953 |
Li et al., 2012 [36] | aCGH (720Â k) | 12 | 259 | 2.30-1550 | 98.74 | 65.07 | 16.85 | 77 | 2.4593 | 2197.924 | 2.1379 |
Chen et al., 2012 [39] | SNP chip (60Â k) | 1693 | 565 | 50.39-8102.06 | 252.71 | 247.55 | 139.87 | 284 | 9.0706 | 15386.182 | 14.9658 |
Wang et al., 2013 [40] | SNP chip (60Â k) | 14 | 63 | 3.20 -827.21 | 97.85 | 158.37 | 9.98 | 24 | 0.7665 | 2302.633 | 2.2397 |
Rubin et al., 2012 [42] | Genome sequencing | 117 | 1,928 | 0.12-175.50 | 3.00 | 5.23 | 10.08 | 305 | 9.7413 | 6777.8 | 6.5926 |
Paudel et al., 2013 [41] | Genome sequencing | 16 | 3,118 | 6.00-96.00 | 10.00 | 12.74 | 39.72 | 479 | 15.298 | 16537.356 | 16.086 |
All the above |  | — | — | — | — | — | — | 849 | 27.116 | 33018.169 | 32.116 |