Skip to main content

Table 2 Genetic diversity parameters using Porcine SNP60 Beadchip (SNP) and Next generation sequence data (NGS)

From: Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds

Continent Category Population SNP NGS
Ho He F Het
Europe Local BS 0.28 0.29 0.13 2.16E-03
Europe Local CA 0.27 0.24 0.17 1.62E-03
Europe Local CM 0.26 0.28 0.17 1.87E-03
Europe Local CS 0.19 0.2 0.41 1.14E-03
Europe Local CT 0.26 0.27 0.21 1.27E-03
Europe Local GO 0.21 0.21 0.34 1.45E-03
Europe Local IB 0.21 0.23 0.33 1.34E-03
Europe Local LB 0.25 0.25 0.23 1.86E-03
Europe Local MA 0.15 0.19 0.55 7.58E-04
Europe Local MW 0.27 0.27 0.16 1.81E-03
Europe Local TA 0.2 0.2 0.38 1.45E-03
Europe Commercial DU 0.26 0.27 0.29 1.63E-03
Europe Commercial LR 0.31 0.32 0.16 2.07E-03
Europe Commercial LW 0.3 0.31 0.19 1.82E-03
Europe Commercial PI 0.31 0.3 0.16 2.09E-03
Europe Wild WB_NL 0.17 0.19 0.55 1.01E-03
Asia Wild WB_NCH 0.17 0.18 0.53 2.96E-03
Asia Wild WB_SCH 0.21 0.22 0.45 3.49E-03
Asia Local MS 0.17 0.17 0.53 2.54E-03
  1. Ho: Observed heterozygosity; He: expected heterozygosity; F: inbreeding coefficient; Het: Heterozygosity estimated using NGS data [15].