Table 3 Dominant functions of the top 10 nonredundant LCR genes identified in each studied Frankia host-specificity group
Function | Percentage |
|---|---|
Alnus | Â |
   Hypothetical, conserved hypothetical, unknown function | 65 |
   Transcriptional regulation | 6.0 |
   Transport-associated | 3.8 |
   Protein kinase | 1.7 |
   Nonribosomal peptide and polyketide synthetases | 1.2 |
   Transposase | 1.2 |
   Acyl-CoA metabolism | 1.0 |
   Amino acids metabolism | 0.9 |
Casuarina | Â |
   Hypothetical, conserved hypothetical, unknown function | 49 |
   Transposase | 9.1 |
   Transcriptional regulation | 5.4 |
   Transport-associated | 4.3 |
   Restriction and modification system | 2.2 |
   CRISPR associated | 2.2 |
   Integrase | 1.6 |
   Putative ATP/GTP-binding protein | 1.6 |
   AMP-dependent synthetase and ligase | 1.6 |
   DNA synthesis | 1.1 |
   NUDIX hydrolase | 1.1 |
   Excisionase | 1.1 |
Elaeagnus | Â |
   Hypothetical, conserved hypothetical, unknown function | 40 |
   Transcriptional regulation | 7.9 |
   Transposase | 6.0 |
   Transport-associated | 5.3 |
   Short-chain dehydrogenase/reductase | 2.8 |
   Acyl-CoA metabolism | 1.8 |
   Protein kinase | 1.3 |
   Methyltransferase of unknown function | 1.2 |
   Integrase | 1.1 |
   Alcohol/Aldehyde dehydrogenase | 1.0 |