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Table 4 Distribution of antisense PACs in M. truncatula and Arabidopsis

From: Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice

Case1 M. truncatula Arabidopsis
PAC# PAT# PAC% Gene pair# PAC# PAT# PAC% Gene pair#
1 1743 99321 30 1014 9045 780712 49 5325
2 535 41069 9 282 2059 67714 11 1288
3 1562 30389 27 - 4808 12220 26 -
4 1661 7279 29 - 2552 6064 14 -
Total 5531 177758 100 1296 18464 863710 100 6613
  1. 1Cases 1–4 are as described in Wu et al. [7]. Specifically:
  2. Case 1 – antisense PACs map to the 3′-UTR of an adjacent, convergently-transcribed gene.
  3. Case 2 – antisense PACs map to the CDS or 5′-UTR of an adjacent, convergently-transcribed gene.
  4. Case 3 – antisense PACs are near the end of an adjacent, convergently-transcribed gene, but do not map to the nearby annotated gene.
  5. Case 4 – antisense PACs cannot be attributed to an adjacent, convergently-transcribed gene.