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Table 4 Distribution of antisense PACs in M. truncatula and Arabidopsis

From: Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice

Case1

M. truncatula

Arabidopsis

PAC#

PAT#

PAC%

Gene pair#

PAC#

PAT#

PAC%

Gene pair#

1

1743

99321

30

1014

9045

780712

49

5325

2

535

41069

9

282

2059

67714

11

1288

3

1562

30389

27

-

4808

12220

26

-

4

1661

7279

29

-

2552

6064

14

-

Total

5531

177758

100

1296

18464

863710

100

6613

  1. 1Cases 1–4 are as described in Wu et al. [7]. Specifically:
  2. Case 1 – antisense PACs map to the 3′-UTR of an adjacent, convergently-transcribed gene.
  3. Case 2 – antisense PACs map to the CDS or 5′-UTR of an adjacent, convergently-transcribed gene.
  4. Case 3 – antisense PACs are near the end of an adjacent, convergently-transcribed gene, but do not map to the nearby annotated gene.
  5. Case 4 – antisense PACs cannot be attributed to an adjacent, convergently-transcribed gene.
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BMC Genomics

ISSN: 1471-2164

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