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Table 1 Exome capture library statistics

From: Efficient linkage mapping using exome capture and extreme QTL in schistosome parasites

    Female parents Male parents F2 untreated females F2 treated females F2 untreated males F2 treated males
Total data Number of mapped reads   87,100,659 25,711,555 21,640,228 31,561,784 39,224,999 29,417,710
Bait regions1 Number of reads mapping to bait regions   67,492,249 11,208,843 7,037,441 15,412,158 20,936,397 15,770,592
Percentage of reads mapping to bait regions   77.49% 43.59% 32.52% 48.83% 53.37% 53.61%
Read depth Mean 366 106 95 165 178 125
Median 274 65 82 133 159 104
Exome Number of reads mapping to exome   65,114,964 10,837,365 6,808,470 14,939,809 20,271,770 15,311,788
Percentage of reads mapping to exome   74.76% 42.15% 31.46% 47.33% 51.68% 52.05%
Read depth Mean 337 100 90 123 166 117
Median 250 61 78 104 150 98
Z chromosome Comparison between Z-linked and non Z-linked regions2 Ratio of mean read depth 0.54 1.00 0.54 0.55 1.01 0.97
  1. 1Bait regions extend beyond the exon boundaries, so the statistics for bait regions and exome are slightly different.
  2. 2The Z-linked regions are positioned between 3.5-19.5 Mb and 23.5-31 Mb on the Z chromosome.