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Table 1 Summary of the genotype calling results

From: An update of the goat genome assembly using dense radiation hybrid maps allows detailed analysis of evolutionary rearrangements in Bovidae

SNP array Ns Nneg Ndis Ret. rate estimate Call rate Missing proportion FNR
Ovine 54,231 3,969 6,634 37% 73% 7% 7%
Bovine 54,001 12,577 5,903 35% 80% 5% 5%
  1. Ns: number of SNPs with raw data, Nneg: number of SNPs not callable in the goat, Ndis: number of SNPs discarded based on their retention rate (see details in the text). Call Rate = Proportion of SNP called retained/retention rate estimate. Missing proportion: proportion of missing data, FNR: estimate of the false negative rate in the SNP called “un-retained”.