An update of the goat genome assembly using dense radiation hybrid maps allows detailed analysis of evolutionary rearrangements in Bovidae

Table 1 Summary of the genotype calling results

SNP array	Ns	Nneg	Ndis	Ret. rate estimate	Call rate	Missing proportion	FNR
Ovine	54,231	3,969	6,634	37%	73%	7%	7%
Bovine	54,001	12,577	5,903	35%	80%	5%	5%

Ns: number of SNPs with raw data, Nneg: number of SNPs not callable in the goat, Ndis: number of SNPs discarded based on their retention rate (see details in the text). Call Rate = Proportion of SNP called retained/retention rate estimate. Missing proportion: proportion of missing data, FNR: estimate of the false negative rate in the SNP called “un-retained”.

ISSN: 1471-2164