Table 3 Distribution of genes that are targeted by miRNAs and subsequently produce candidate secondary siRNAs in (A) Cassava and (B) Castor bean, and their function categories
#. Genes | Transcripts yielding 21-nt enriched siRNAs |
|---|---|
A. Cassava | |
  2 | ATPase E1-E2 type family protein/haloacid dehalogenase-like hydrolase family protein |
  2 | auxin response factor 8 |
  2 | auxin signaling F-box 3 |
  1 | dicer-like 1 |
  2 | F-box/RNI-like superfamily protein |
  1 | GRAS family transcription factor |
  10 | NB-ARC domain-containing disease resistance protein |
  1 | phosphate transporter 1;3 |
  1 | scarecrow-like 3 |
  4 | TAS3 and unannotated loci |
B. Castor bean | |
  3 | auxin response factor |
  1 | auxin signaling F-box |
  1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
  1 | Cupredoxin superfamily protein |
  1 | disease resistance protein (TIR-NBS-LRR class), putative |
  1 | Galactose oxidase/kelch repeat superfamily protein |
  2 | GRAS family transcription factor |
  1 | Integrase-type DNA-binding superfamily protein |
  1 | Leucine-rich receptor-like protein kinase family protein |
  1 | Malectin/receptor-like protein kinase family protein |
  1 | SET domain protein |
  3 | squamosa promoter binding protein-like |
  1 | TCP family transcription factor |
  3 | TAS3 |