Table 1 Alignment of the HLA-B sequence and genotype in 96 samples
Sample | HLA-B SSO | HLA-B PSP* | Depth | Note | |||
|---|---|---|---|---|---|---|---|
Allele 1 | Allele 2 | Allele 1 | Allele 2 | Allele 1 | Allele 2 | ||
0554 | HLA-B*44:03 | HLA-B*40:06 | HLA-B*44:03:01:01 | HLA-B*40:06:01:01 | 1543.4 | 1114.5 | Â |
0555 | HLA-B*40:01 | HLA-B*44:03 | HLA-B*40:01:02 | HLA-B*44:03:01 | 2228.5 | 2084.8 | Â |
0556 | HLA-B*13:01 | HLA-B*46:01 | HLA-B*13:01:01 | HLA-B*46:01:01 | 860.5 | 765 | Â |
0560 | HLA-B*13:01 | HLA-B*51:01 | HLA-B*13:01:01 | HLA-B*51:01:01 | 1416.5 | 1455.9 | Â |
0605 | HLA-B*52:01 | HLA-B*52:01 | HLA-B*52:01:01:02 | HLA-B*52:01:01:02 | 6928.7 | Homozygous | |
0607 | HLA-B*07:02 | HLA-B*07:02 | HLA-B*07:02:01 | HLA-B*07:02:01 | 7357.3 | Homozygous | |
0616 | HLA-B*40:02 | HLA-B*52:01 | HLA-B*40:02:01 | HLA-B*52:01:01:02 | 513.2 | 500.6 | Â |
0639 | HLA-B*40:06 | HLA-B*35:01 | HLA-B*40:06:01:01 | HLA-B*35:01:01:02 | 1758 | 1656.8 | Â |
0642 | HLA-B*40:01 | HLA-B*35:01 | HLA-B*40:01:02 | HLA-B*35:01:01:02 | 2016.8 | 1545.3 | Â |
0645 | HLA-B*54:01 | HLA-B*54:01 | HLA-B*54:01:01 | HLA-B*54:01:01 | 6537 | Homozygous | |
0649 | HLA-B*55: 02 | HLA-B*40:02 | HLA-B*55:02:01 | HLA-B*40:02:01 | 1402.3 | 1635.5 | Â |
0652 | HLA-B*15:01 | HLA-B*35:01 | HLA-B*15:01:01:01 | HLA-B*35:01:01:02 | 2395.4 | 2308.4 | Â |
0658 | HLA-B*56:01 | HLA-B*44:03 | HLA-B*56:01:01 | HLA-B*44:03:01 | 1686.7 | 2074 | Â |
0663 | HLA-B*13:01 | HLA-B*52:01 | HLA-B*13:01:01 | HLA-B*52:01:01:02 | 1538.1 | 1455.7 | Â |
0666 | HLA-B*54:01 | HLA-B*38:02 | HLA-B*54:01:01 | HLA-B*38:02:01 | 2105 | 1790.8 | Â |
0703 | HLA-B*55:02 | HLA-B*40:06 | HLA-B*55:02:01 | HLA-B*40:06:01:01 | 1173.1 | 1445.3 | Â |
0735 | HLA-B*44:03 | HLA-B*38:02 | HLA-B*44:03:01 | HLA-B*38:02:01 | 2507.5 | 1998.5 | Â |
0739 | HLA-B*40:02 | HLA-B*48:01 | HLA-B*40:02:01 | HLA-B*48:01:01 | 1947.1 | 2382.9 | Â |
0741 | HLA-B*59:01 | HLA-B*07:02 | HLA-B*59:01:01:01 | HLA-B*07:02:01 | 1458.6 | 2336 | Â |
0772 | HLA-B*07:02 | HLA-B*48:01 | HLA-B*07:02:01 | HLA-B*48:01:01 | 3512.9 | 3425 | Â |
0779 | HLA-B*44:02 | HLA-B*39:01 | HLA-B*44:02:01:01 | HLA-B*39:01:01:03 | 1677.5 | 1060.6 | Â |
0784 | HLA-B*40:06 | HLA-B*15:01 | HLA-B*40:06:01:01 | HLA-B*15:01:01:01 | 1875.1 | 1820.8 | Â |
0785 | HLA-B*52:01 | HLA-B*51:01 | HLA-B*52:01:01:01 | HLA-B*51:01:01 | 6041.4 | 6018.4 | Onlu 4 heterozygous SNVs |
0810 | HLA-B*40:02 | HLA-B*46:01 | HLA-B*40:02:01 | HLA-B*46:01:01 | 560.8 | 546.8 | Â |
0815 | HLA-B*35:01 | HLA-B*07:02 | HLA-B*35:01:01 | HLA-B*07:02:01 | 1239.5 | 1740 | Â |
0821 | HLA-B*40:01 | HLA-B*40:02 | HLA-B*40:01:02 | HLA-B*07:02:01 | 1239.5 | 1740 | Â |
0821 | HLA-B*40:01 | HLA-B*40:02 | HLA-B*40:01:02 | HLA-B*40:02:01 | 2144.4 | 1925.5 | Â |
0822 | HLA-B*54:01 | HLA-B*35:01 | HLA-B*54:01:01 | HLA-B*35:01:01 | 1550 | 1840.6 | Â |
0823 | HLA-B*15:11 | HLA-B*07:02 | HLA-B*15:11:01 | HLA-B*07:02:01 | 703.5 | 914.6 | Â |
0830 | HLA-B*51:01 | HLA-B*48:01 | HLA-B*51:01:01 | HLA-B*48:01:01 | 1833.8 | 2509 | Â |
0969 | HLA-B*40:06 | HLA-B*51:01 | HLA-B*40:06:01:01 | HLA-B*51:01:01 | 1575.4 | 1650.4 | Â |
0975 | HLA-B*44:03 | HLA-B*07:02 | HLA-B*44:03:01 | HLA-B*07:02:01 | 180.4 | 209.3 | Â |
0976 | HLA-B*54:01 | HLA-B*35:01 | HLA-B*54:01:01 | HLA-B*35:01:01 | 3635.9 | 3759.2 | Â |
0977 | HLA-B*44:02 | HLA-B*15:18 | HLA-B*44:02:01:01 | HLA-B*15:18:01 | 722.2 | 574.4 | Â |
0979 | HLA-B*39:01 | HLA-B*39:01 | HLA-B*39:01:01:03 | HLA-B*39:01:03 | 2128 | 2125.7 | Only 1 heterozygous SNV |
0991 | HLA-B*15:01 | HLA-B*39:01 | HLA-B*15:01:01 | HLA-B*39:01:01:03 | 1685.4 | 1551.3 | Â |
0997 | HLA-B*15:01 | HLA-B*51:01 | HLA-B*15:01:01:01 | HLA-B*39:01:01:03 | 1685.4 | 1551.3 | Â |
0997 | HLA-B*15:01 | HLA-B*51:01 | HLA-B*15:01:01 | HLA-B*51:01:01 | 2588 | 2692.1 | Â |
0999 | HLA-B*48:01 | HLA-B*39:01 | HLA-B*48:01:01 | HLA-B*39:01:01:03 | 1470.4 | 1045.3 | Â |
1009 | HLA-B*54:01 | HLA-B*39:01 | HLA-B*54:01:01 | HLA-B*39:01:01:03 | 326.8 | 294.7 | Â |
1011 | HLA-B*52:01 | HLA-B*07:02 | HLA-B*52:01:01:02 | HLA-B*07:02:01 | 730.9 | 943.7 | Â |
1012 | HLA-B*35:01 | HLA-B*48:01 | HLA-B*35:01:01:02 | HLA-B*48:01:01 | 1830.1 | 2482.1 | Â |
1013 | HLA-B*54:01 | HLA-B*52:01 | HLA-B*54:01:01 | HLA-B*52:01:01:02 | 533.9 | 600.7 | Â |
1014 | HLA-B*55:02 | HLA-B*51:01 | HLA-B*55:02:01 | HLA-B*51:01:01 | 970.1 | 1153.1 | Â |
1016 | HLA-B*44:03 | HLA-B*35:01 | HLA-B*44:03:01 | HLA-B*35:01:01 | 739.7 | 655.5 | Â |
1018 | HLA-B*46:01 | HLA-B*15:01 | HLA-B*46:01:01 | HLA-B*15:01:01:01 | 5360.8 | 5496.1 | Only 7 heterozygous SNVs |
1030 | HLA-B*40:06 | HLA-B*07:02 | HLA-B*40:06:01:01 | HLA-B*07:02:01 | 1638.8 | 2668.6 | Â |
1045 | HLA-B*15:11 | HLA-B*35:01 | HLA-B*15:11:01 | HLA-B*35:01:01:02 | 1597.5 | 1448.8 | Â |
1056 | HLA-B*58:01 | HLA-B*67:01 | HLA-B*58:01:01 | HLA-B*67:01:01 | 2497.9 | 2214.5 | Â |
1057 | HLA-B*40:02 | HLA-B*40:02 | HLA-B*40:02:01 | HLA-B*40:02:01 | 4113.6 | Homozygous | |
1064 | HLA-B*40:06 | HLA-B*51:01 | HLA-B*40:06:01:01 | HLA-B*51:01:01 | 963.5 | 1048.8 | Â |
1065 | HLA-B*54:01 | HLA-B*52:01 | HLA-B*54:01:01 | HLA-B*52:01:01:02 | 1213.9 | 1563.8 | Â |
1071 | HLA-B*56:01 | HLA-B*40:06 | HLA-B*56:01:01 | HLA-B*40:06:01:01 | 4061.2 | 1223 | Â |
1079 | HLA-B*40:02 | HLA-B*39:01 | HLA-B*40:02:01 | HLA-B*39:01:03 | 2319.8 | 1507.5 | Â |
1082 | HLA-B*40:01 | HLA-B*51:01 | HLA-B*40:01:02 | HLA-B*51:01:01 | 639.3 | 542.7 | Â |
1083 | HLA-B*59:01 | HLA-B*54:01 | HLA-B*59:01:01 | HLA-B*54:01:01 | 716.5 | 1208.2 | Â |
1087 | HLA-B*44:03 | HLA-B*07:02 | HLA-B*44:03:01 | HLA-B*07;02:01 | 1975.5 | 2605.1 | Â |
1095 | HLA-B*40:02 | HLA-B*54:01 | HLA-B*40:02:01 | HLA-B*51:01:01 | 946.4 | 962.2 | Â |
1097 | HLA-B*40:01 | HLA-B*40:06 | HLA-B*40:01:02 | HLA-B*40:06:01:01 | 2642.2 | 1822.5 | Â |
1110 | HLA-B*40:01 | HLA-B*51:01 | HLA-B*40:01:02 | HLA-B*51:01:01 | 1277.1 | 1156.9 | Â |
1111 | HLA-B*54:01 | HLA-B*40:03 | HLA-B*54:01:01 | HLA-B*40:03 | 831.3 | 943.7 | Â |
1116 | HLA-B*52:01 | HLA-B*07:02 | HLA-B*52:01:01:02 | HLA-B*07:02:01 | 981.1 | 1535.6 | Â |
1117 | HLA-B*52:01 | HLA-B*51:01 | HLA-B*52:01:01:02 | HLA-B*51:01:01 | 5900.6 | 6084.9 | Only 3 heterozygous SNVs |
1119 | HLA-B*35:01 | HLA-B*07:02 | HLA-B*35:01:01:02 | HLA-B*07:02:01 | 921.3 | 1370.1 | Â |
1129 | HLA-B*59:01 | HLA-B*40:02 | HLA-B*59:01:01:01 | HLA-B*40:02:01 | 1472.9 | 2178.5 | Â |
1131 | HLA-B*44:03 | HLA-B*52:01 | HLA-B*44:03:01 | HLA-B*52:01:01:02 | 1519.9 | 1456.8 | Â |
1142 | HLA-B*40:02 | HLA-B*39:04 | HLA-B*40:02:01 | HLA-B*39:04 | 1253 | 886.5 | Â |
1144 | HLA-B*44:03 | HLA-B*15:11 | HLA-B*44:03:01 | HLA-B*15:11:01 | 1061.7 | 993.2 | Â |
1149 | HLA-B*44:03 | HLA-B*52:01 | HLA-B*44:03:01 | HLA-B*52:01:01:02 | 719.6 | 633.6 | Â |
1154 | HLA-B*59:01 | HLA-B*40:02 | HLA-B*59;01:01:01 | HLA-B*40:02:01 | 146.2 | 171.8 | Â |
1157 | HLA-B*35:01 | HLA-B*48:01 | HLA-B*35:01:01:02 | HLA-B*48:01:01 | 911 | 1077.3 | Â |
1160 | HLA-B*59:01 | HLA-B*54:01 | HLA-B*59:01:01:02 | HLA-B*54:01:01 | 129.8 | 166.8 | Â |
1161 | HLA-B*55:02 | HLA-B*51:01 | HLA-B*55:02:01 | HLA-B*51:01:01 | 402.5 | 366.6 | Â |
1163 | HLA-B*56:01 | HLA-B*46:01 | HLA-B*56:01:01 | HLA-B*46:01:01 | 2048.1 | 2276.5 | Â |
1165 | HLA-B*15:01 | HLA-B*07:02 | HLA-B*15:01:01:01 | HLA-B*07:02:01 | 688.1 | 907.3 | Â |
1167 | HLA-B*40:06 | HLA-B*52:01 | HLA-B*40:06:01:01 | HLA-B*52:01:01:02 | 1486.7 | 4508.1 | Â |
1169 | HLA-B*54:01 | HLA-B*54:01 | HLA-B*54:01:01 | HLA-B*54:01:01 | 7086.1 | Homozygous | |
1171 | HLA-B*54:01 | HLA-B*44:03 | HLA-B*54:01:01 | HLA-B*44:03:01 | 1586.6 | 1833.9 | Â |
1175 | HLA-B*15:11 | HLA-B*15:01 | HLA-B*15:11:01 | HLA-B*HLA-B*15:01::01:01 | 5717.6 | 5693 | Only 3 heterozygous SNVs |
1182 | HLA-B*55:02 | HLA-B*51:01 | HLA-B*55:02:01 | HLA-B*51:01:01 | 1156.6 | 1451.5 | Â |
1183 | HLA-B*54:01 | HLA-B*35:01 | HLA-B*54:01:01 | HLA-B*35:01:01 | 1413.5 | 1537.7 | Â |
1184 | HLA-B*52:01 | HLA-B*52:01 | HLA-B*52:01:01:02 | HLA-B*52:01:01:02 | 6701.3 | Homozygous | |
1199 | HLA-B*51:01 | HLA-B*51:01 | HLA-B*51:01:01 | HLA-B*51:01:01 | 5229.1 | Homozygous | |
1201 | HLA-B*44:03 | HLA-B*52:01 | HLA-B*44:03:01 | HLA-B*52:01:01:02 | 1990.6 | 1665.9 | Â |
1203 | HLA-B*54:01 | HLA-B*52:01 | HLA-B*54:01:01 | HLA-B*52:01:01:02 | 1246.4 | 1313.2 | Â |
1217 | HLA-B*40:01 | HLA-B*46:01 | HLA-B*40:01:02 | HLA-B*46:01:01 | 2225.1 | 1882.2 | Â |
1224 | HLA-B*40:02 | HLA-B*40:03 | HLA-B*40:02:01 | HLA-B*40:03 | 6306.5 | 6286.4 | Only 3 heterozygous SNVs |
1225 | HLA-B*40:01 | HLA-B*44:03 | HLA-B*40:01:02 | HLA-B*44:03:01 | 1554 | 1399.6 | Â |
1229 | HLA-B*52:01 | HLA-B*52:01 | HLA-B*52:01:01:02 | HLA-B*52:01:01:02 | 6748.5 | Homozygous | |
1234 | HLA-B*44:03 | HLA-B*40:06 | HLA-B*44:03:01 | HLA-B*40:06:01:01 | 2490.3 | 1715.9 | Â |
1236 | HLA-B*54:01 | HLA-B*40:06 | HLA-B*54:01:01 | HLA-B*40:06:01:01 | 1132.4 | 1244.4 | Â |
1238 | HLA-B*40:02 | HLA-B*67:01 | HLA-B*40:02:01 | HLA-B*67:01:01 | 2040.9 | 1691 | Â |
1239 | HLA-B*40:03 | HLA-B*51:01 | HLA-B*40:03 | HLA-B*51:01:01 | 1787 | 1789.8 | Â |
1250 | HLA-B*44:03 | HLA-B*51:01 | HLA-B*44:03:01 | HLA-B*51:01:01 | 357.7 | 317.8 | Â |
1259 | HLA-B*40:02 | HLA-B*07:02 | HLA-B*40:02:01 | HLA-B*07:02:01 | 1346.9 | 1934.4 | Â |
1260 | HLA-B*40:06 | HLA-B*35:01 | HLA-B*40:06:01:01 | HLA-B*35:01:01:02 | 641.9 | 680.8 | Â |
1265 | HLA-B*40:01 | HLA-B*40:06 | HLA-B*40:01:02 | HLA-B*40:06:01:01 | 2226.2 | 1691.7 | Â |