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Table 3 Phages present in the set of 31 V. cholerae genomes from the SEED database

From: Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions

Phage

Source

Initially identified in genome

Genomes

CTX

PhAnToMe id 141904.3, RefSeq id NC_015209

N16961

195

RS

PhAnToMe id 141904.3, RefSeq id NC_015209

N16961

115

Kappa

PhAnToMe id 493906.2; RefSeq id NC_010275

1587, AM-19226, B33, MJ-1236, MO10, NCTC-8457, RC9, RC27

53

WASA

Ref. [33]

INDRE-91/1

18

Mu-like

Identified using PhiSpy [21]

12129(1), TM-11079-80, TMA-21, V51

10

VP882

Identified using PhiSpy [21]

AM-19226, TM-11079-80

5

  1. The phages in this table were mapped by homology to all V. cholerae genomes (see Methods).