From: Motif depletion in bacteriophages infecting hosts with CRISPR systems
Type | Motif | Species | Evidence | Publication |
---|---|---|---|---|
I-A | GG | Metallosphaera sedula, | computational | [4] |
Sulfolobus solfataricus | ||||
I-A | GG | Sulfolobus solfataricus | interference | [7] |
I-A | GG | Sulfolobus islandicus | interference | [8] |
I-B | ACT,TAA, | Haloferax volcanii | interference | [9] |
TAT, TAG, | ||||
TTC, CAC | ||||
I-B | GG | Methanothermobacter, | computational | [4] |
thermautotrophicus, | ||||
Listeria monocytogenes | ||||
I-C | GAA | Streptococcus mutans | computational | [6] |
I-C | GAA | Streptococcus pyogenes, | computational | [4] |
Xanthomonas oryzae | ||||
I-D | GTY | Microcystis aeruginosa | computational | [10] |
I-E | AAG | Erwinia amylovora | computational | [11] |
I-E | AAG | Pseudomonas aeruginosa | computational | [4], |
[12] | ||||
I-E | AWG | Escherichia coli | computational | [4] |
I-E | ATG | Escherichia coli | interference | [13] |
I-E | AAG | Escherichia coli | plasmid elimination | [14], |
[15] | ||||
I-E | AAG,ATG, | Escherichia coli | interference | [16] |
AGG,GAG | ||||
I-E | AAY | Gardnerella vaginalis | computational | [17] |
I-E | AAY | Lactobacillus casei | computational | [18] |
I-F | GG | Escherichia coli | interference | [19] |
I-F | GG | Pectobacterium atrosepticum | interference | [20] |
I-F | GG | Pseudomonas aeruginosa | computational | [4], |
[12] | ||||
I-F | GG | Shewanella spp. | computational | [4] |
II | GG | Streptococcus agalactiae, | computational | [4] |
Streptococcus pyogenes, | ||||
Listeria monocytogenes | ||||
II | GG | Streptococcus agalactiae | interference | [21] |
II | GG or | Streptococcus mutans | computational | [6] |
WAAR | ||||
II | YAAAWY | Streptococcus mutans | phage challenge | [6] |
II | GGNG | Streptococcus thermophilus | computational | [22] |
II | GGNG | Streptococcus thermophilus ∗ | interference | [23] |
II | GG | Streptococcus pyogenes, | interference | [24] |
Streptococcus mutans, | ||||
Streptococcus thermophilus, | ||||
Francisella novicida | ||||
II | ACA | Campylobacter jejuni | interference | [24] |
II | GATT | Neisseria meningitidis | interference | [24] |
II | GNNNCNNA | Pasteurella multocida | interference | [24] |
II | AGAAW | Streptococcus thermophilus | phage challenge | [25] |
II | AAAAW | Streptococcus thermophilus | interference | [24] |
II | TGAAA | Lactobacillus casei | computational | [18] |