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Table 1 Basic statistics of the whole genome sequences generated by the HiSeq sequencer

From: Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population

Samples Total bases (GB) Average depth Read 2 %Q30: 100–150 cycles Aligned bases (GB) Mapping ratio (%) SNPs
01 103 33.6 0.740 101 98 3,631,549
02 100 32.4 0.670 97.3 97 3,606,901
03 106 34.3 0.600 97.1 92 3,597,816
04 104 34.0 0.710 101 96 3,625,724
05 96 30.6 0.670 91.4 95 3,601,895
06 99 30.8 0.660 96.0 97 3,604,534
07 96 31.4 0.690 93.9 98 3,588,904
08 97 31.1 0.590 90.2 93 3,598,436
09 104 33.2 0.610 96.8 93 3,603,430
10 96 31.5 0.740 92.6 97 3,601,931
11 106 34.4 0.740 104 98 3,616,799
12 100 31.3 0.520 94.1 94 3,569,104
Mean 101 32.4 0.662 96.3 95.7 3603919
%CV 3.7 4.3 10 4.2 2.2 0.43