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Table 4 Average numbers of NGS SNP calls showing concordant or discordant with Omni 2.5-8

From: Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population

  Proton concordant & HiSeq discordant HiSeq concordant & Proton discordant All concordant Both discordant
Total HiSeq = Proton All discordant
Average 64 1849 76945 216 202 14
%CV 19.6 55.6 1.24 4.23 5.51 31.6
Common 1 43 66472 80 67 1