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Table 3 Representative pathway genes

From: BAC and RNA sequencing reveal the brown planthopper resistance gene BPH15 in a recombination cold spot that mediates a unique defense mechanism

Pathways Representative genes Transcript S0_S6 S0_S48 R0_R6 R0_R48
Ethylene ACO LOC_Os02g53180.1 - U - -
  ERF LOC_Os02g43790.1 - U - -
Jasmonate LOX LOC_Os08g39850.1 - U - -
  AOS2 LOC_Os03g12500.1 - U - -
  OPR1 LOC_Os06g11210.1 - U - -
Salicylic acid SAMT LOC_Os11g15040.1 U U - U
Receptor kinase Receptor-like protein kinase 5 LOC_Os02g13510.1 - U - U
  BAK1 LOC_Os03g32580.1 - U - -
  XA21 LOC_Os11g36180.1 - - - U
MAP kinase MAPK LOC_Os03g17700.1 - U - -
Ca2+ signaling OsCML15 LOC_Os05g31620.1 - U - -
  Calmodulin-binding protein LOC_Os12g36910.1 - U - U
Biotic stress PR1a LOC_Os07g03710.1 - U - -
  PR1b LOC_Os01g28450.1 - U - U
  PR3 LOC_Os03g30470.1 - U - -
  PR4b LOC_Os11g37960.1 - U - -
  PR9 LOC_Os07g48020.1 - U - U
  PR10 LOC_Os12g36880.1 - U U U
Wounding WI12 LOC_Os03g18770.1 U - - -
TF EREBP LOC_Os03g08500.1 - U - -
  Basic helix–loop–helix protein LOC_Os09g31300.1 - U - U
  C2H2 zinc finger protein LOC_Os05g37190.1 - U - U
  C3H zinc finger protein LOC_Os07g38090.1 - - - -
  WRKY domain TF LOC_Os01g14440.1 - U - -
Pr. synthesis tRNA synthetase LOC_Os01g54020.2 - D - -
  40S ribosomal protein LOC_Os03g18570.1 - D - -
  60S ribosomal protein LOC_Os05g06310.1 - D - -
  Translation initiation factor LOC_Os05g49970.2 - D - -
Pr. targeting Mitochondrial import translocase LOC_Os02g48610.2 - D - -
Pr. folding Chaperonin LOC_Os06g09679.1 - D - D
Pr. degradation Ubiquitin family protein LOC_Os02g06640.1 - U - -
  OsFBL7 LOC_Os02g10700.1 U U - -
Pr. modification Protein phosphatase LOC_Os02g13100.1 - U - -
  Calcium-dependent protein kinases LOC_Os07g05620.2 - U - U
  CRK5 LOC_Os04g56430.1 - U - -
  CRK6 LOC_Os03g16960.1 - U - -
  Serine/threonine protein kinase LOC_Os02g01730.1 - U - -
Trypsin inhibitor BBTI5 LOC_Os01g03360.1 U U U -
Glucosidase GNS1 LOC_Os05g31140.1 - U - -
  GNS4 LOC_Os01g71670.1 - U - U
  GNS5 LOC_Os01g71340.1 - U - U
PS light reaction PS I reaction center subunit LOC_Os03g56670.1 - D - -
  PS II reaction center protein LOC_Os01g71190.1 D D - D
  ATP synthase LOC_Os07g32880.1 - D - -
PS Calvin cycle Ribulose bisphosphate carboxylase LOC_Os12g17600.1 - D - -
Tetrapyrrole Aminolevulinic acid dehydratase LOC_Os06g49110.1 - D - -
CHO synthesis Starch synthase LOC_Os04g53310.1 D - D -
CHO degradation β-amylase LOC_Os03g22790.1 U U U -
Lipid synthesis Acetyl-CoA carboxylase LOC_Os05g22940.1 - D - -
  Glycerol-3-phosphate acyltransferase LOC_Os01g63580.1 - D - -
TCA Citrate synthase LOC_Os01g19450.1 - D - -